DreINT0017539 @ danRer10
Intron Retention
Gene
ENSDARG00000077174 | QSOX2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:HGNC:30249]
Coordinates
chr5:63620424-63620768:+
Coord C1 exon
chr5:63620424-63620553
Coord A exon
chr5:63620554-63620645
Coord C2 exon
chr5:63620646-63620768
Length
92 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
3' ss Seq
CATCTTATTTTTGATTTCAGCTG
3' ss Score
7.65
Exon sequences
Seq C1 exon
GTCTAAGGTATACATGGCAGATCTGGAGTCTGGCTTACATTATCTCCTGAGGGTTGAGCTGGCCACCCACAAGACCTTAGAAGGAGAAGAGCTAAAAACCTTCAAGGACTTTGTAACCGTTGTTGCCAAG
Seq A exon
GTAGTGTTTTAACACAAACGCAGCATTTCTTTGCACTGGAGGTGTCTTCTCACGCTGAAATCATTTACAGTGCATCTTATTTTTGATTTCAG
Seq C2 exon
CTGTTTCCAGGCCACCAGTCGGTGGTGAAACTTTTGGAGACATTGCTGGAATGGCTAGTCAGTTTACCTTTGGAGAAGATCCCCTATGATGCCATCCTCGATCTAGTTAACAACAAGATGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077174:ENSDART00000111282:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGCAGATCTGGAGTCTGG
R:
GCCATTCCAGCAATGTCTCCA
Band lengths:
173-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]