GgaINT0125840 @ galGal3
Intron Retention
Gene
ENSGALG00000001758 | QSOX2
Description
NA
Coordinates
chr17:8720500-8723019:+
Coord C1 exon
chr17:8720500-8720629
Coord A exon
chr17:8720630-8722896
Coord C2 exon
chr17:8722897-8723019
Length
2267 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
TTCTTTTTTAATATCCTCAGCTT
3' ss Score
6.47
Exon sequences
Seq C1 exon
ATCGAAGCTGTACATGGCTGACCTTGAATCTGGATTGCATTACCTGTTCCGGGTAGAGCTTGCTACACACAAGATGCTTGAGGGAGCTGAGCTAAAGACCTTCAAGGATTTTGTTACCATCTCTGCCAAG
Seq A exon
GTGTGTACTTCTGCTCCTTGATTATTTCAAGGAAAAAAAAAAGGACTGTAACATAAAATTTATTGTGATGTAAGCTTCTCAAAATGTCTTTCAGAATATATTTAAATACGTGCTTTTCCAATAGCTTAAAAAATAGTTTTGTGAAATTCTGTAAATGTTGTTTTTTGAGTTATTTTCTACCGTACTGATATCCTTAAAGAACTGAAATGCAGTTTAATTTCATCTCAGAGAGATCAAACTTGAATAAAGGCTAAGCCATCTGCAGCATATTGAATGAATGCTATAAATATAGTCCATTTATCAGATCTTTGGGATAAATAGCTATTTTAACTCAGTAAGTAAAAGTATTATTTTCATTTTTAAATTTTGTTATGGCATGCTTGACAAATAGTGCTCTATTTAGAGATTTCTAATTTTAGTCTAAATTTTGAATGTGATTGAGGTTGAGTATTTCAAAAATGAAGATGCTCACACATTACACCTGTAATAAAAGCAACGTATGCAATGTAACTTGGAAAAAAAAATGAAATTTAACTTTAACATCAGCCTTATGAAATGAGCAGACTCTCTCTACATCTACTTACTGAACAGCTAACACTTTGCTTTATTTAAAATACCTGAACCAATTCCTGCTGAAAGGAATAATAAGGGCTGTATGATCTATTCCCTGCTGTATGGGTGTATCAGTCAGACAGTTTCTTGCCCCCCTGCGGCCATCAGAGGTCAGAAATCTCTAGCTGGCCTCATTTCTTTAAGAAAGTGTGGTGGTAATCTTTCCATCATATTATCCCTAAAACATCCTCTGTTCTTCCTGATGGCTCCTGGCCAGCTTATGTCATTTGTTTCCTTGGCTATTAGTGCATAAATGGAGAATGCTGTTGCATGCTCATCTCCAGATTGCCATTATACGTGTGGGAACTCCTGTCCTTTATTTGCATTCTTTTGTTGTGAAAAGCTTTTCTCTTGGTTCTCATTCACAATTCCCACATACTTACATGTGGACAGTTTACATCTGAGGCAGTCAGAATGCTAAGTTTGCAGTGTTGGTACTATAATTATATGCATCTTTCTGCAGGCTCACGGCACTGAATTTCAAAGTTGAACTCTGTATCTTGCTTTCCTTTTTAACAAAGTACCCAGCAATCAATCCATAACAACAGCTTTGTGAATCAGGACTTCCAACACTTTTTATCCTATCCTCCTGTTTAACAGCATTTAAAATGATGATAAATTCTAAATCCAGAGATCTGATCTCTGCCCCCCTGCTAGGGAAATCTTCATTATTGTAGAATTAGATTGTATTTTTTTCTTCTTCCATGAAATATATCTACCAGAAACACCCTGCAACTATTGTCTTTTAGATAGTAATGTATGATATTTTGGGATTCCTACAGGAGTAGATGGGATTATAGATGCTGTCTGTAGTACAGAAGTATGCTGTTTTAGTTGTATAGTTGGACTGTGGCTGCAAAGGGACTTATATGTGCAGAGCATCTCCTGACATCTATTAAATACATGAAATGTATTTAAGACAGCAGATACAGGGACTTTGTTTCCCCTTCCTCTGGAGAGGTACTTAGAAGGTGTTGTGCATACTCAATTCTATAGTAAATACAACAATCAAGCAAGCATTTCTAGTGTATAATAATGATATGACTGCTGATTTACAGTTCCTCATACTTGTCTGACAGAGCTTGACTGCTTTAACTTGCAGGTTAAGGTAATCACCATTTCCAAACCACTTTGGAAATCACTTTTACACGTATGAAAAGGAAAGTTATTTTTCTAGATAACCACCATCATCAACACCTTAAAAAAAAAAAAAAACACAAAGAAAAACAGAATAAAAATATTATAAGAACCAGTTGCTGTGGTTTATATGCAAAGAGTGAGAAAGGATTTCAGCCTTTCTTAGGTCTTATGCTCCTTAAGCTGTACACTAAGCTGAATTACCTTCATAGAAAATTCTGTGTAATCTGTCAAAAGTTGTTCTGCTTGAAGTTGAGTATCTTCATGCTGGTTAACATTTTGCAAATGTTTTAAAAGCGTTAAATTTTATGAGTTACTGTGAGATAACTGATAAACACATTTAGTGGTAAGCAGAATGTGTTTGCACACAACAAAAGAAAATCTTGTCTATTAAACTTAATGGATGCATTTCAAAGACAAGAAAAACACACTTAGCTAAACATAAAACTGTCGTGCTGCTAATGAAAGTTGCGCTTTAAAACGTTATTCTATTTTCTTTTCTTTTTTAATATCCTCAG
Seq C2 exon
CTTTTTCCTGGCCGTCAGCCTGTGGTGAAGTTGTTAGAGACCTTGCAGGAGTGGCTGGTGAGCCTTCCATTAGACAAAATCCCTTATGATGCTATTCTAGATCTGGTCAACAACAAAATGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001758:ENSGALT00000034856:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF088066=Sep15_SelM=PU(23.6=29.5)
A:
NA
C2:
PF088066=Sep15_SelM=FE(72.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]