MmuINT0130229 @ mm9
Intron Retention
Gene
ENSMUSG00000036327 | Qsox2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:MGI Symbol;Acc:MGI:2387194]
Coordinates
chr2:26074129-26076279:-
Coord C1 exon
chr2:26076150-26076279
Coord A exon
chr2:26074252-26076149
Coord C2 exon
chr2:26074129-26074251
Length
1898 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
GATGGATTCTTCTTTCTTAGCTG
3' ss Score
5.03
Exon sequences
Seq C1 exon
GGCCAAGCTGTATACTGCAGACCTGGAGTCGGGACTTCACTACCTGCTGAGAGTGGAGCTGGCTGCTCACAGGTCCCTGGCTGGAGCCCAGTTAAAGACATTCAGGGACTTCGTGACTGTCGTTGCCAAG
Seq A exon
GTATGGGTGGTTCTGCTCAGGCTATGGTACTGGGTCCCATTTAGTATGAGCTAGGATCATCTGTCTGCTGATGTGGGTGATTGGCCAGCCTGGACCACCTGGTAGTGACTGGTATGGCCTGACAATGAGCAGAAGAGGCTGAGGACAAAGAGCAGAGCACACTGAGCTCTGACTCTCTGACTCAGCTTGGGCAGTTCAGCAGGCTGAGGGAACCAGTAGATGAGGCAAGAGGAATAAGCAGGTTATATAGATATAGACGAATGGTTGTGTAGATATGAAGGGTGGGAACCTGCTCCTAAGCAGCTTCAGACTGGGGTCCTAGGAGAGTTAGGTGTCCAGAGATGGGGAAGGTCATGACACAGCACAACCCAGGTCCTGCCATGTCAGAGTCAGGTTGAAAAAGACTGGCCAGCATAGCCACAGTCTTCCAGAAGCCATGTGAGGGAATTAGTTCCATGTGTAAGTGCTGAGCAAGGCTAAGGGGTAACTTTGAAGAGATACCTAACAAAGCTAATGCAGGAAGGCTGATAGGTGTGGCAGGGCTGTGCTCCATGGACATTCTGGCCCCAGTAGGTGGGCTCCCAAGGGCTTGGAAGAAAAACCCTAAGCTAGCAAGTTCTGATGGCTGGCCCCTGAAGAGCAGGACTTTTGCTTGTCGAGGTAGGAAGGGGTAGGCAAGGATAAGACAGGGCAGAATGCTTGGCATCCTCAGAAGACCTAGATGGGCTAGGACCACCTCCATCATGGTGATTTATGGTACAGGCTCATGTTCTGGTACTGGCTCAGTTTCCTACCAAGTAATCATTCCCGGTGCCCAGAGCATGGGGGAGAAGATCTCCCTGCCCTCTGCAGCTTAGTTTACATGTTGAGTTCCAGGTCAGCCAGGGCTACATAGAGACCCTGTCTCAAAACCAGAACGTCTTCAGCTAAGCTAACCCTATGTCTCACTAGACACTGCTGCCTGGATTGACTCCCAGCCAGCGCACTCGCTCCAGGCACACAGTTGTTGGCCTGCAGGCGCTGGCCTTGCCTCGATGAGCAAGTCTCTTTGCTGTTGCCCTCCTGCCTTCTCTCAGTTAGGTCTGAGGCTTGAGGACGCACCATATGATGGTAACAGCTCCTTAAGTCACAGCAAGACTTACAGGTGTAAAATTAGCCAACGTAATGCTTTTGTAATTAGTGCATAAACATATATCTAAAAGCCAGTTATGCTCACGCCTTTATTCCCAGCACTCAAGAGACAGAGGGGGAGGATCTCTGTGAGTTCAAGGCCAACTTGGTCTACAGAGGGAGCTTCAGGATAGCTAGGGCTACACAAAGAACCCGTCTTGAAAAAACCAAGACAGACAGGGAACAAGCAATATACTATCAGATAGAAAGAGAGAGCAGACAAACAACATACCATCCAAAGAGGAAGAAAACCACCAGGGTTCTCTTAGCTACTTGCTCTCCAGTAGGCTGCATGTCATCAATGCCTGTGATAGGTTCTTGTTCCTATCTATATGCCTTGTAGGGCAGTTGATTAGAGGTAGTAAAAGAGGCTGTTGGAACTGAAGAAGTGTGGAAAGAGGATAAGTATGCGGGTAGTGTCTCCTGGAGGGCTATTATGCTCTTGATAACTTGGTAATACACCATGCCCAGCAGTCTCCCTGTCTGACGTCATAAAATAGCCATCTGGAATCCCCCTAGTTCTTGAAGAAGCCCCAGTTCTAGGCTGATCTTAAGGTTGAATTCATTTTCTTAAAGGACTGCCTGAGGCAGGGCGTGTGTTGGTGTGGGACTTTGACCATGCTTTGTGGACTTTGTCACAGGGTCACAGCTCTTTGTGCTGCTTTCAGACTTTGGTAGGTAGTGGCAATTTTTCTCAGCATCTCAGAGGATGGATTCTTCTTTCTTAG
Seq C2 exon
CTGTTCCCTGGCCGGCCTGCAGTCAAGAAGCTGTTGGAGACACTGCAGGAGTGGTTGGCCAACCTCCCCCTGGACAAGATTCCATATAATGCCATCCTAGACCTAGTCAACAACAAAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036327-Qsox2:NM_153559:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAAGCTGTATACTGCAGA
R:
TGCATTTTGTTGTTGACTAGGTCT
Band lengths:
252-2150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: