BtaINT0121066 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011129 | QSOX2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:HGNC:30249]
Coordinates
chr11:103752516-103753701:-
Coord C1 exon
chr11:103753579-103753701
Coord A exon
chr11:103752667-103753578
Coord C2 exon
chr11:103752516-103752666
Length
912 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
3' ss Seq
CCACACCCCTCTCTGCCCAGATT
3' ss Score
6.96
Exon sequences
Seq C1 exon
CTCTTCCCCGGACGACCGCCAGTCAGGAAGCTGCTGGAGATGCTGCAGGAGTGGCTGGCCAGCCTTCCACTGGACAGGATCCCCTACGATGCCGTGCTTGACCTGGTCAACAACAAGATGCGG
Seq A exon
GTGAGGTGGCCCCTTTGTAGAGGGAAGTCTGCCTGGGAGCCCCTCGCCGCCCCTGTGTCCCTGGTCTGCAGTCCTGGTTTCCATGACGACCTCCCGTTGCTCCCCAGGCCAGGGTCTGGATCAGCTGACTGAGACGATGAGGGGTTTCCGCAGGGAGGCAGCGCTAGGGTTTCTCTTTCAATTTTTAGTAAACTCATCTAGATCTCACACCTGGAAAAGGAGTAAATAAAGACAACATGTCCGGCAGGGATGCCCTGGTTGAGCTGCCTGGCCGCTGCAGCCGCAGGCCCAGGGTGTGGGCTCCCTGGGGTCTGCTCTGGCCGCCTGACAGGTGCCAGTGTCTGGCCTGGCCTCCCCTCCATGGGCCCCAGGCCGAGTGACCGGAAGGTGGCTGAGAGCAGGAGCATGGCCCCGGGGCCAGGCCTCTGTGTCGCCTGCAGGGCCTGAGGGGCCGTTTGCAGCCTGCACTCATGGGCTGTTACAGGCTCAGGCCCATCAGCTCGCTGCTCGTTAAGTGAAGATCCTGTTTGTTCTGGCTGAGAATTGTCTGACAATTGAATTCCTTTATTATCATTATTAGTCTTCTGTAAATCTCATTACAACTAATTCTAACCTGAAACAATGGCGGGCGTCCTGCATGCTTCCTCTTGCTGGTTCATCACGGCCCAGGTGGATGCTTCCCTTCTCCCAAAGATGAAACAGTGGGCCACGGCTCCATGTTCTGAGAAGTCAGTAAAATAGAGACTTTTTTCTCCGGTTTGTTCCTGGATTTAACCGTACTCGTAGTTGATAAAGTTTTCAGACAGATACTCCCTGTGTAACCACCATGCAGTTGAGACAGGACAGTCACCAGCAATTGTTAATTTTAACAATTCAGTATCTCTCCTTCTCTCCACACCCCTCTCTGCCCAG
Seq C2 exon
ATTTCTGGGATATTTCTCACTAATCACATAAAGTGGGTTGGATGTCAAGGAAGCCGACCGGAGCTGAGGGGCTACTCGTGTTCTCTCTGGAAACTGTTCCACACTCTGACTGTTGGAGCCGGGACCCACCCAAAGGCCCTGGATGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011129:ENSBTAT00000042859:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.098
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF047778=Evr1_Alr=PU(23.3=47.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGACCGCCAGTCAGGAAG
R:
CATCCAGGGCCTTTGGGTG
Band lengths:
258-1170
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development