GgaINT0125841 @ galGal3
Intron Retention
Gene
ENSGALG00000001758 | QSOX2
Description
NA
Coordinates
chr17:8722897-8724169:+
Coord C1 exon
chr17:8722897-8723019
Coord A exon
chr17:8723020-8724018
Coord C2 exon
chr17:8724019-8724169
Length
999 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGC
5' ss Score
9.14
3' ss Seq
TAAATACGTATTCTTTTCAGATT
3' ss Score
8.24
Exon sequences
Seq C1 exon
CTTTTTCCTGGCCGTCAGCCTGTGGTGAAGTTGTTAGAGACCTTGCAGGAGTGGCTGGTGAGCCTTCCATTAGACAAAATCCCTTATGATGCTATTCTAGATCTGGTCAACAACAAAATGCGG
Seq A exon
GTAAGCTGTTACTAGTTTCCAGTGTAAAATACAGCATTAGTAAAGGATAAGATTCTATATAAATCTAAGGCATCACTTACTGATGGTCCCTCAGCCGTAATGGAGTTATAAGAAGGTTAAAATGAAAATAAAGTGAAATCATGGCCAGAAAAAAAAAAATCCACATGAAGAAATTGGAATGAGAGAATTGCAGCAGACAATCCTGGCATGGCTTTATGAGCAAGCAGTTGCTACCTTCCCTAATGTCAGCTTCAAACCATGGGAGAGCAGACATTTTTGAATTGGCTGTACTTGCTATGCCTTTTATCAGCAGAATTCTCTTAAGTTCAGAGCTTAAAAGGTGGGAAATTTACCATTGAAGGGTAAATTATTCTTTCATTATTCCTATTTAATTTCCTGACTTCGTATGGTCCTTGCCAGGAATCCCATCGCAGTTTGGTAATGCAAAGCACTACAATGGAGCTGTCTTTGCACAGAAGTTAATTTGAGTCTTTCTTCCCATGAAGTGGGATTGCTATCTGGAATTTGGAAAGCAGGCATGTTTTAGGAATCAGAGAGATGAATCATTGGAATAAAATCCCATACAAGATTTTCATATATAATAGTAGTTTTAAGAAGAAATAAACATTAATTTTACATCTGATCCTCTTAAGATGTTACTGCTGTAAATTCCATAGATCTTGCCGAGTGATGCACAATTTTTATTGTGCCCACAGAAGCTGTAACACAGCTTACAACAATGTGTGTTTTGTTTTCATACTGTGCTTAAAAAAAAAGTCTCTAGAAGTTAAGCTGCTTAAGGTACCCTGGCAGACTAATCAGACATCCCTGATGTGCATCTTGGCAGGTTTAATATCGCTGTGTACTGTATGTCATGTAATGTGTTTGCAAGACAGGTGAGTTTAATAATGGGCTTTGGAGTGAAGTATCATTTTCACAAATGTTGAAGTTAATTTAGGTCCCAGAGCTGTGTATATCTTAAATACGTATTCTTTTCAG
Seq C2 exon
ATTTCTGGGATATTTCTTACTAAGAGAACAGAGTGGGTTGGCTGTCAGGGCAGCAGGCCGGAGCTCAGAGGCTATACTTGTTCCCTTTGGAAGCTGTTTCATACCCTAACTGTGCAAGCTGCGCTGCGACCAACAGCTTTGATAAGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001758:ENSGALT00000034856:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF088066=Sep15_SelM=FE(72.7=100)
A:
NA
C2:
PF047778=Evr1_Alr=PU(23.3=47.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTTTCCTGGCCGTCAGC
R:
ACTTATCAAAGCTGTTGGTCGCA
Band lengths:
270-1269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]