HsaINT0135826 @ hg19
Intron Retention
Gene
ENSG00000165661 | QSOX2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:30249]
Coordinates
chr9:139107000-139108568:-
Coord C1 exon
chr9:139108446-139108568
Coord A exon
chr9:139107151-139108445
Coord C2 exon
chr9:139107000-139107150
Length
1295 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
3' ss Seq
TTTGTTTGTTTGTTTTTCAGATT
3' ss Score
11.41
Exon sequences
Seq C1 exon
CTGTTCCCTGGACGGCCGCCAGTCAAGAAGCTGTTGGAGATGCTGCAGGAGTGGCTGGCCAGCCTTCCCCTGGACAGGATCCCCTACAACGCCGTGCTTGACCTGGTCAACAACAAGATGCGG
Seq A exon
GTGAGCCCCAGAACCCTCGCCAGCCACGCTGCACCCTCCTTCCCTCGCCTTCCTTCCCTTGCCCTTAGCTGGTGCATCTCCCTGCTCGGGGCCCGGGCTCCGCTGTGAGGAAGGGGAGCAGTGACTTACTGTCTCCACGACAGCATCATGGCCATGGCCTCCTGTCTGCCTTGGCAGCGTCATGCTGGGACTTCAGTTTAAGGACAGCTCACCAAAAGTGCACTGTGACCACCTGTCCTTTGGACAAAATGGGGTTTTCTCAAGCAACGTAGTAGTTGGGCTTTTTAAATTTTTAGTAAGCCAATCTGACGAAAACTGATGTATTCAGTAAGTGTGGCAGCCTTTCCAGAGCTTTCCCCAAGACCAGGTGCCAGCAGGTGCCAGTCTTTGCTCAGGGGACCAGCACCCCAAGAGGTCCTGGCACTCCGTCCTGCCATTCCCTCCTTAGTCCAGATCAGCAGCTTCTCTGTGGCCCCCAGAGTGTTTACTCGCGGGCAGTAAACCCAGCGTGCTGCTTGTCCGACGCCCGCGTGGTCAGTGCACACAGCAGATCTTCTGGGAATCCTGTAAGGTGCACTTGTCGTGCCGTGATTTTGCCAGCTTTGTCATTTGCTGGCTGCAGCTGAGAAGCAGACGGTGCCGGGCTTCTTGCCTGAGTCTGTCTTCCACCTTGACTCTACTCCGAGCTCGAGGTCATGGGAGCACTCTCACGTGACTGCGACGTGTGACATCTCCCTCGAGAGCACGTCCTGGGCTCAGGAGTCCTTAGGGAGGAAAAGGTTGATGAGACACGAAACCAAACCCAGCGGAATCTGCCTGGGGCTCTCAGCCCTCCCAGTCCAGCAGTCACCCACTCTGATGGCCACCCTATTGCTTTTTCAAAGTGAACACACCTTGTTTGTTCTGGCCAAGAATTATTTGACAGTTGAGCTTTTTTCTGTTGTTAGTTGCCTTTTCTCTTAATACTGTCCTTACAACTAATTCTAATTTAAAAGAAAAGGTGGATACATTTTATGCTTAATATTACTGGTTTATCAAGATACAGAAGAACTGTCTCTTCAGAGATTGGCTTGAGAGCTCCTTTAGTAAAGGAGACCATTTCCTCTCTTTTGTTTTATTGAATTTAAATTTGCATATGGTAGGAGGCACAGATCTTATGTGTACAGTTGATACAGCTTCAGTAAACCACACCCCCATTATCCACCCCCCCCAGTCAAGAAGGCAGCTGTCGACTGTTTTTAATTTCAACAATTATCTTTTATTCTTTGGGGTTTTTTTGTTTGTTTGTTTTTCAG
Seq C2 exon
ATTTCTGGAATATTCCTTACTAATCACATAAAGTGGGTTGGATGTCAAGGAAGCCGATCTGAGTTGAGGGGTTACCCGTGTTCTCTCTGGAAACTGTTCCACACTTTGACTGTTGAAGCCTCGACCCACCCAGATGCACTGGTTGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165661-QSOX2:NM_181701:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.010
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF047778=Evr1_Alr=PU(23.3=47.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTCCCTGGACGGCCG
R:
CTGTGCCAACCAGTGCATCTG
Band lengths:
274-1569
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)