MmuINT0130230 @ mm10
Intron Retention
Gene
ENSMUSG00000036327 | Qsox2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:MGI Symbol;Acc:MGI:2387194]
Coordinates
chr2:26217633-26218731:-
Coord C1 exon
chr2:26218609-26218731
Coord A exon
chr2:26217784-26218608
Coord C2 exon
chr2:26217633-26217783
Length
825 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TGTGGATGTTTTCTTCTCAGATT
3' ss Score
8.87
Exon sequences
Seq C1 exon
CTGTTCCCTGGCCGGCCTGCAGTCAAGAAGCTGTTGGAGACACTGCAGGAGTGGTTGGCCAACCTCCCCCTGGACAAGATTCCATATAATGCCATCCTAGACCTAGTCAACAACAAAATGCAG
Seq A exon
GTGAGTCCCCACCATGTCTAGTGCACACACTGCTATTTCCTTCACTTCCCAGGTTTCTTCCTGCTGCTCAGGCCTGACTGGGACCCAGAATCTGCAGAAAGGAAGAGTAAATCTACCCACCCATGGTGCCTTCCTGGCTTTGCTGCTAGTACTTGGTACCACAGCACAGGCCTCATCTCCCTGCTTGGAAAAACCCGTTTCCCCATGTAGAAAAGCCCCAGGCCCCCAAGTAGAGAAGCCTCATTATTTTTTCTGTTCCTATTTCTATGATGACTTCATGCTCACATCCTTACCCCAGTGATGCTGCTAGGTTACCCTGAAGGCGTCAGTGTAAGGACAGCCCAGCAAGAACATGCTGGGAGAGCTGCCTTCAAACCATACAGCACCTACGGCTTGGCTTTCGGTTCTTACATCGTTGTTTGATTCATTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCTCTCCCTCCCTTCCTTTCCTTCTTTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTTTCTCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTAGATAATGGTTCTCGTGTAATCTAGACTAGCCTCAAACTCAAGATTCTCCAGTTTTAGCCAATTATCTATCCTTAATCCAAGTGCTAAATAAAATTATTGGTGTGCAGTGAGAAACTTTGATAAATACATACCCTTGGATGATCATCTCCCCACTCAAGGCCAGAAGCATCCTGCAGCTAGTGTTAATTTTAACATTTGTCTTATATTCTTTGTGGATGTTTTCTTCTCAG
Seq C2 exon
ATTTCTGGAATCTTTCTTACCAGCCACGTAAAGTGGGTGGGATGTCAAGGAAGTCGATTGGAGTTGAGGGGCTACCCATGCTCCCTCTGGAAACTGTTTCACACTTTGACGGTTCAGGCCTCCACCCATCCAGAAGCGCTGGCTGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036327:ENSMUST00000036187:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.020
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF047778=Evr1_Alr=PU(23.3=47.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGGCCTGCAGTCAAGA
R:
CAGCGCTTCTGGATGGGTG
Band lengths:
254-1079
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types