RnoINT0121292 @ rn6
Intron Retention
Gene
ENSRNOG00000018574 | Qsox2
Description
quiescin sulfhydryl oxidase 2 [Source:RGD Symbol;Acc:1584720]
Coordinates
chr3:3671425-3672422:-
Coord C1 exon
chr3:3672300-3672422
Coord A exon
chr3:3671576-3672299
Coord C2 exon
chr3:3671425-3671575
Length
724 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TGTGGATGTTTTCCCCTCAGATT
3' ss Score
9.92
Exon sequences
Seq C1 exon
CTGTTCCCTGGCCGGCCACCAGTCAAGAAGCTGTTGGAGACCCTGCATGAGTGGCTGGCCAACCTCCCCCTGGACAAGATTCCATACAATGCCATCCTAGACCTAGTCAACAACAAAATGCAG
Seq A exon
GTGAGTCCCAGCCCTGGCCGTGTCTAGTGTACGTACTGCTGTCCCTTCACTTCGCATGTGCCTTCCTGCGGTTCAGGCCTGACCTGCACCCGGAGTCTGTAGAAAGGAAGAGTAAATCTGCCCGCCATGGTGCATGCCTGCTTTGCTGCTAGTACTTGGTACCACAGCACAAGCCCCATCTCCCTGCTTGGAGAAACCAGCCTCCCCATGTAGAAAACCCCTATGTCCCCGTGTGGAGAAGCCCCGTGTTCCCAAATAGAGAGGCCTCATGATATTACTGTTCCTATTTCTGTGATGACTTCATGCCTGCATCCTTACTCAGTGAAAACACGCTGTGAGAACTGCCTTCAAACAGCGGAGCACCGAAGGCTTTGGTTTTTACATTGTTTGATTCCTCCCTCCCTTCCTCTCTCCCTCCCTTCCTTCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTCTCTTCCTTCCTTTCTTCCTCCCCTCCTCTCTCCCTTCCTTCCTTCCTTCCTTGAGATAATGTTTCTCATGTAATCACACTAAAGATTCTGCAGTCTTGGCCAATTAATCCAGCCTTGATCCAAGGCTGGGATTGTAGGCGTGCAGTGGGAAACTTTGATAAAGACATAGCCTTGACTGATCATCTCCCCACTCAAGGGCAGCGCACCCTGCAGCAAGTGTTCATTTTAACATTTGTCTTGTGTCCTTTGTGGATGTTTTCCCCTCAG
Seq C2 exon
ATTTCTGGACTCTTTCTTACCAGCCACATAACGTGGGTAGGATGTCAAGGAAGCCGATTGGAGTTGAGGGGCTACCCGTGCTCCCTCTGGAAACTGTTCCACACTTTGACGGTTCAGGCCTCCACCCATCCAGAAGCGCTGGTTGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018574:ENSRNOT00000061735:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF047778=Evr1_Alr=PU(23.3=47.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGCCACCAGTCAAGAAG
R:
CTGTGCCAACCAGCGCTTC
Band lengths:
263-987
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]