BtaINT0121216 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017803 | RAB14
Description
Bos taurus RAB14, member RAS oncogene family (RAB14), mRNA. [Source:RefSeq mRNA;Acc:NM_001130754]
Coordinates
chr8:112511228-112512347:-
Coord C1 exon
chr8:112512285-112512347
Coord A exon
chr8:112511282-112512284
Coord C2 exon
chr8:112511228-112511281
Length
1003 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
TTGGAACTTTTTTTTAACAGGGG
3' ss Score
6.85
Exon sequences
Seq C1 exon
CTAGTGCCACCATGGCAACTGCCCCGTACAACTACTCCTACATCTTTAAATATATTATTATTG
Seq A exon
GTAAGTTTGTTTAACTTATAGTCTTGTTTGTTCTCCAAAGGTTAAAATGCAAAATGTTTATATGCTAATACTTAACATAGTACCCCAGAGGAAGTGAATACTTGTCTTTTTCACTGCAAAGTTAAAACTCCTTTGGTAGGATTTTTTTATCAGTGACCTGTTACTTTGTGACCCTGGGTACAAAGCTGGCTACCTTTGAAGTGACTTGAGGGCTACCTGAAAGTTAATACTGGGAATGAGATTAATTTCCTAGGAGTGTTGATACATTCCAAAAATATCATGAAATTTCTCAGAGCCCCCTGGATTCCAAAAATTGATAAAAATTCAGAATTGTGTAAGATACATGAAATAAATCGTAGTTTTTCTCTTGCTGTTTATCCATATGTAAGAGTAAGTTGAAATATACGTGTTTTTCTTTTAATTCTTCCTGTTAGTTTGGTTTAATATTGAGCTTATGTGACTATATGGTAATGCTTCCTTCACCAAAGGTTAAATTGCTGTCAGTACAGTCAGAGGTGATACCTGTTCCATTCGGATTTTCATGTGATGCACATTCTTTTGTGGACTTCTATAAGAAATATGAGATAAAATGGGATCTAGTGAATCAGATTTCCAAAGCTTATTATTTCTACTTGTTCTGTGCTGCCCTTTTGGTCACTCCCAGGAGTTTTTGGCTTTTATGCATGGGTTAAGGGAAAAAACAAAAAGTTGTAATAGTTTAAAGTAGAAAACACTGTTCAGTTTTTCTGTTAAAAAGCTTTTCCCAGCTGGTGTCTATTTATTGACATAATTCATAACCAGATTCTACCACCAGTGAATGTTGGGAATAGTCAATTTATATATCACAGTGAAAACCTACCTTTAGGATCTTTTGAACTCATTATAAATGATGAAAATGAAAATTTTTAAGTGCCCAGAGGTTTGTGATGTAATATGGTAAAAGAGGTATAGCAATCATTGCATGTAATTATAAGAGGATAAAATTGGAACTTTTTTTTAACAG
Seq C2 exon
GGGACATGGGAGTAGGAAAGTCCTGCTTGCTTCACCAGTTTACAGAGAAAAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017803:ENSBTAT00000023671:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0007117=Ras=PU(3.1=27.8)
A:
NA
C2:
PF0007117=Ras=FE(11.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]