MmuINT0130390 @ mm9
Intron Retention
Gene
ENSMUSG00000026878 | Rab14
Description
RAB14, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1915615]
Coordinates
chr2:35047032-35048199:-
Coord C1 exon
chr2:35048141-35048199
Coord A exon
chr2:35047086-35048140
Coord C2 exon
chr2:35047032-35047085
Length
1055 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
CATTTTCTTTTTTTAAACAGGGG
3' ss Score
9.48
Exon sequences
Seq C1 exon
TGCCACCATGGCAACTGCACCGTACAACTACTCTTACATCTTTAAGTATATTATTATTG
Seq A exon
GTAAGTTTACTTAATGTGTATGCTTGTCCTCCAAAGAAAGTTAACACATGAAACACGTATACATCAGTACCTAACATACTGCTGCAGAAGTGCTTGCTTTATTGGCTTCAGAACTAAAGCTTTTTGATGAAGATGCATATGTCTTTTCTAACATGGCACTGGGTACTTATCTAGTCTCTGGCCACCAATGAAATGATGGTGGTTGTTCTTCAGGGCCACCTGCGAACTTGTTGAGGTTATAAAATTAACTTCCTGCTAGTGCCGAAATATCCCAATGTCATAAAAGTTTTCAGGTCCTCTTGAATTCCAAAATAAGTAGAGAACACCGATTCAGAATTGGTTGTGACACACAAACACACACACAAATAGATTTGTTTCTTAAATGTCAAGACTTTGCTTAGATTCTCTTAATGCATTTATCCAGGAATGGTTATAAATAACAGGTAAAAGCCCAGATGCTGTGCTGAGACCAGTGGAAGAGCTCTTACAAGCTTATCCTGGCTGTGGGCTTGTGTTTGATCTCTGCAATGGAAAACAAAACACAACAACCCGTAAATAAAGGAAAGAAAAGAAATGTCATCTCTTTTGCTTTGATGTCAAGTTTGTATAGCGTTGTGAGATGGCCTCTATTGTAATATAGAGGTAAGACAACACAGTTAGCCAAACTTCCAGATTTTAATTTGTTATTTATTTGTTTGCTTTTGTGATAGTTCATTTGCATAAACCAATAAATGCACTTGGGATACCCACTTGGAAACAGTTCAAATTTAAAAAAAAAACTCACCACAATAATTTTTCTGTTATAAGTCCTGTTGAACTTGTTGTCTATTTACTAAACACTAATTTACGGCAAAATTCTATCCTGCTAAAAGTTAGAAGTGCTCAGTTAAACGTCTTTTGAATTCATAATAAAGGAGGAAGATGCAGATATTCCAAGTGTTCAGAAACTTGAGGTGTATAGGATATGCTGATATGCAGCAGTCATTGCTTATGATTATACGCGTAAAAATTGAGAAATATAATTACCATCTGAAACATTTTCTTTTTTTAAACAG
Seq C2 exon
GGGATATGGGAGTAGGAAAATCTTGCTTGCTTCATCAATTTACAGAAAAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026878-Rab14:NM_026697:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0007117=Ras=PU(3.1=27.8)
A:
NA
C2:
PF0007117=Ras=FE(11.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: