GgaINT0125651 @ galGal4
Intron Retention
Gene
ENSGALG00000001474 | RAB14
Description
Ras-related protein Rab-14 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZKU5]
Coordinates
chr17:8383936-8384652:-
Coord C1 exon
chr17:8384594-8384652
Coord A exon
chr17:8383990-8384593
Coord C2 exon
chr17:8383936-8383989
Length
604 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
AACTGCTCTTTCTGTAACAGGGG
3' ss Score
8.86
Exon sequences
Seq C1 exon
TGCCACAATGGCAACTGCACCTTACAACTACTCCTACATCTTTAAGTACATCATTATTG
Seq A exon
GTAAGTACTAAGATATGTTTATGCCAATATCTATGTAACAGCGTGCCTCCAAACTACTGTTGACTTCTGTTGCACGTTACTTGCTATATAGCATTAGCTCTTTGAGTAGTTCCTCATAGATCACCATATTTGCCCCAAAGCTTTAGCAGCTGACAAAATGATGCAGATGCTTTGTGTGCTGCTGTGACTGTTGCCAGGTGGACTGAGAGTGGGGCTGGTTGGTTATCCATATTTTTGATAGACACTACTTGCAATTGCAAGCAATACAGGAGGAGAGCGAGCACTCAGTGTGTTGTGCTTCAGTTTCTTGCAGATCAGCTTATTTTGACCTTGTGAAACACAAGTGTAAAGTTAGTAATGCAGTTATCATTTGTGTATTTTCTGCTCCACCCTTGCTTGCAGCTCTGTACCTGTAACCAAAATTACAGTGCAGTTGTAATGCTGATAAATCTTGAAGACTGTAGCCAGGTGTAGGAAGTTAGGAAGTTGCATGCTAGACCTGAGAAAGGAATGGCTGCCTGTCCCTGTGGGTGTGTTGTGTGGGATGAGCAGAATGCTTGTTGCAGTGATATGGTGTCTGCCTTAACTGCTCTTTCTGTAACAG
Seq C2 exon
GGGACATGGGTGTAGGAAAGTCCTGTTTGCTTCACCAATTCACGGAAAAGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001474:ENSGALT00000002236:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0007117=Ras=PU(20.0=27.8)
A:
NA
C2:
PF0007117=Ras=FE(11.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]