DreINT0123360 @ danRer10
Intron Retention
Gene
ENSDARG00000074246 | rab14
Description
RAB14, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-030826-20]
Coordinates
chr5:62697711-62698101:+
Coord C1 exon
chr5:62697711-62697769
Coord A exon
chr5:62697770-62698047
Coord C2 exon
chr5:62698048-62698101
Length
278 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
ATTGTGTGGTGTTTTCATAGGTG
3' ss Score
8.52
Exon sequences
Seq C1 exon
AGCCAAAATGACGACCGCACCATATAACTATTCCTATATTTTCAAATATATCATTATTG
Seq A exon
GTAAGTCAGCATCCTGTTTTCACCTATATGTGCCTTTTTGTAAGATACATGCACAGTATATTGCGTTTCATACGATGCAATGTATAGTCATTAAGCACATTTGAAAATCTGGTTGACCAGAGTGCTGTACAAAGTAAAAATAAGAATATTAATGCAGCTAAAATAGAAGTAATACATCAAAAATTGTAATAAGCATGCTGTAACCAATGTAGTTTAATTTTCTTTTCACTTCAAATGACTTTGTGTTAATTGTGTATGATTGTGTGGTGTTTTCATAG
Seq C2 exon
GTGACATGGGGGTTGGCAAGTCCTGTTTACTCCACCAGTTCACAGAAAAGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074246:ENSDART00000124616:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0007117=Ras=PU(7.4=27.8)
A:
NA
C2:
PF0007117=Ras=FE(26.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]