HsaINT0135970 @ hg19
Intron Retention
Gene
ENSG00000119396 | RAB14
Description
RAB14, member RAS oncogene family [Source:HGNC Symbol;Acc:16524]
Coordinates
chr9:123954449-123955697:-
Coord C1 exon
chr9:123955639-123955697
Coord A exon
chr9:123954503-123955638
Coord C2 exon
chr9:123954449-123954502
Length
1136 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
ACTTCTTTTTTTTTAAACAGGGG
3' ss Score
10.44
Exon sequences
Seq C1 exon
TGCCACCATGGCAACTGCACCATACAACTACTCTTACATCTTTAAATATATTATTATTG
Seq A exon
GTAAGTTTATTTAACTTACACTCTTGTTCCCAAAAGAAGGTTAACATACAAAATATTTATATGTTAATACTTAAACAGTACCACTTCAGGACTGAGTGATTTTCTTACTGTAAAACTAAAACTCCTTTTATAAGATTTATTTTTGCATTAGCAATGCAGCTTTTGCATTGTGGCCATGGATATTTCTGTGGTACAGTGCTGGTGGGTACCTTGTGAAGTGATGTTCATTGTTCTTGAGGGCTGCTTGAAAGCTTTTTGATGCTAGGAAGTATCAGTGTTTCAAGGAGTGCAGAAACATTCCTAAAATACTGTGAAAGCTCTCAGATTCCCCTGGGTTTCTGTTATAAGGAAAAATTGGTAGAGAATATTGTTTGATTCCAAATCAATTGTGTAATATATATAAAATATAGTATTTTTCTTAATTGGTGTTTTTTTCCTTAAGTTTCAAGAAGGTTTTGCTCAAATTAAGTCTTAATGCTATTTATCCAAACATAAAACTACATTTGAAAGTACACGTTTTTCAATGAATTGTTCACATTAGAACAGTTTGCTTTCATGTTGAACTTAATGTGTCCTTTCTAATGTTTCCTTCATCAAGGGTTAACATTGCTATAGTACAGTCAGAGATGACATCTTTTCTCCTGGGGTTTTCATGTAATGCAAATTCTTTTCTTTCATAGAATAATACAAGAAGTATAAGACAGGGACCTAGTGAATCAAGCTTCCAGAACTCAGTTTGTTATTTCTGCTTGTTACATGCTACCCCATTTGTCAGTTTTTGAAATTTGTTGCTTTTATGCATGAGTTTAAGGAAAAAAACAAAAGAAAACAAAAACATAAAATTTTGAAACAGCTCAAAGTAAAAAAAATTCCATTAAAAAAATAAGCACTTCCCAGCTGGTGGCTATTTATTAACAGTAATAATTTACAGCCAAATTCTGTCACTGCTAAAGATTGGGAATAATATTCCATTTGTGTCTCACAGTGAAAACTTTTGAATCATTATAAAGTAGGAAAATAAAAATTTGTTAAGTGTCCCAGAAACTTGTGATATGTTATATGGTAAGGAATATAGCGATCATTGCATAAAATTGAGAAATGTAATTGCCACCTGAAACTTCTTTTTTTTTAAACAG
Seq C2 exon
GGGACATGGGAGTAGGAAAATCTTGCTTGCTTCATCAATTTACAGAAAAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119396-RAB14:NM_016322:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0007117=Ras=PU(3.1=27.8)
A:
NA
C2:
PF0007117=Ras=FE(11.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)