BtaINT0123170 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016367 | RBM18
Description
Bos taurus RNA binding motif protein 18 (RBM18), mRNA. [Source:RefSeq mRNA;Acc:NM_001034324]
Coordinates
chr11:93105692-93107701:-
Coord C1 exon
chr11:93107615-93107701
Coord A exon
chr11:93105778-93107614
Coord C2 exon
chr11:93105692-93105777
Length
1837 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GCCTTTTTTCTTACTTTCAGAGA
3' ss Score
11.26
Exon sequences
Seq C1 exon
GAAGCAGAACAAGCCATCCAGTGTCTGAACGGCAAGCTGGCCCTGTCTAAGAAGCTGGTGGTGCGCTGGGCACACGCTCAAGTGAAG
Seq A exon
GTGAGTCTAACGGGCTAGAAAGACTGCATCAGCTTGTCCTAAATGAGGCTTTGAAAAGACAGTTGTCCACTCGCCCATTTGCATCCCAGCCTCTGCACATCTGGAACAACCACACGCTGGTCTCCTCCTTGTATTCACCATGTGTGTTTCCAGATTTTTCTTTTGAGAAACATCTCAGGAGGGATTAAGTTCCTTCGCCGTTTCCCTCCACATACCCACAGATTCTGTTTTTGATTGATTTTTCCATGTGACTGATTTGTCTACTCAGACCTCTATCATTTATTTATTTATTTTTGGTAGGAGTTCTTTAGAGGAAAAAATGTATTTATTTTTTAAATTAGTTGCTTTAGGCATTATTAGACTCTTCCCAGCCTCTCAGTTCTGTGGCAAGTTTGAATTGTTTATGCTAAATACTTGAGAAATGGGTAGTTTGTAAGAGTGCTTAAAGCACTGGCATTTCCTTACTCGAGAGATTTTGAGAGTTATTTGTGGGATTTGCAATGCCTGTATTGACTCCAAGGCCCAAGCAGTGGTAAACTGCCGTGTTCATCTCCTAGTTATTCTCTTGGGAAAATGTGCTGGAAAAGCTACAACCATTGAAAAAGAAAAAAGAAGGAAAGAATGGTATTCTGTTTCAGCCAGCACAGGTGAAGTATGCGTTTACACTGGAGCAATCCACAGAGTTGCTTCTCTACTTCCTGCACTGTGGTCTTAACAGACCTGCCTGCAGAGGTTTGTTACAGCCAGATTCGGAGCCTCAGTCTTTATAAACGACCGTAATGCTTGATCAGAGACTCCACCCAGCAAGCTCCCCAGAAAAGAGTCACCAAAATAAAGACATTCGAGTTCAGTGTCGAAGCTCAAAAACAGATTGCAGACAATTCGGATCTTTTTGAGTATTTCAGGATTTCAGGTAATCACAGAGCCTTCTCAATTTCCAGGATCCATCACCTTAAAAATAGAAACAACAAGGAAAATTTCTAAATGCTTTTTTATTCAAAAGAAAATCAAGTCTCATTTGCCAGACTGGCTATCATCTTCTCATCCCGCATGTCTTTCTGACCAGAGACTCCTGATTGCTCTTTAAAAGAAGTATATAATTATCTGACATCAAATAAACTGTACTTTCCTGGAGAATGTTTTCTGTATCAGTGGCTGAAAGCCATTACTAGTTCTCTTCTCCACATAAACCTGTGAAGAGTTGAATGTTATGGTTGTTACTTTGCAGCAATCAAGCAAAACTTTAAAATGCTTGGAATAAAGCGAAATAACTATTGGAAGAAGTGACATGTGACAGAATCAGAACGTGAGAGGGCATTCCTGCTGTGTAGCTGTACCGTCTCTGAATTTAGAGGTTGAAATTCTTTCTCCACCAAATGAGGAGGATTATTGGGTAGATGGGAAGCCTCATCTAAATTTCTTTTTCTATGTTTATGACCTTTATGCTAAAGCTGGACTTCTGTATTAATTCTGAACACAAAGCAGACCTAAGATTGTCTAGAAACAATCTAACAATGGGCTTCCCTGGTGGCTTAGTGGTAAAGAATCTACCTGCCAACGCGGAAGACTTGGATTTGATTGTCTGGGTCGGGAAGATCCCCTGGAGGCGGAAATGGCAACTCTCTCCAGTATTTTTGCCTGGTGACAACCCATGGACAGAGGAGCATGGTAGGCTACAGTCTCCACGTGGTCACAAAGAGTCAGACATGACTGAGAGACTGAACACACATGCTGTCTAAGGATACACTGATAAGATTAGGATTTCTGAACACATGTATTACAGTAAAGGGCTGGTTTCTGCCTGAGTGGGGTAATTTGCCTTTTTTCTTACTTTCAG
Seq C2 exon
AGATACGATCATAACAAGAATGATAAGATCCTTCCAATTAGTCTTGAGCCGTCCTCAAGCACTGAGCCTGCGCAGTCTAACCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016367:ENSBTAT00000021769:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.276
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(25.7=65.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development