MmuINT0132627 @ mm9
Intron Retention
Gene
ENSMUSG00000026889 | Rbm18
Description
RNA binding motif protein 18 [Source:MGI Symbol;Acc:MGI:1915139]
Coordinates
chr2:35976333-35978458:-
Coord C1 exon
chr2:35978372-35978458
Coord A exon
chr2:35976419-35978371
Coord C2 exon
chr2:35976333-35976418
Length
1953 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
ACCCTTCTATTCACTTTCAGAGA
3' ss Score
10.95
Exon sequences
Seq C1 exon
GAAGCAGAACAAGCCATCCAGTGTCTCAATGGCAAGCTGGCGCTGTCTAAGAAGCTGGTTGTACGATGGGCCCACGCTCAAGTCAAG
Seq A exon
GTAAGTCTAGGGGAGACAGAGGGCAAAGCACGTCACCCTAGCTGAGTCTCTGAAGAGCCCCCAGATCTCCATTGCATCCAGCCTATCTGTCCCATGCCCATGCTTTGCTCTCTTGTGCTGGCATCTACCATGTGTCTTGCCAGATTTTTCTCTTGAGAGCTTCTTGAGAGGAAGTAAGCTCCTTCATTGTTTCTCTGCACATGCTCACAGATCCTGTTTTGATTGGTTTTTGCACGTGGCTGATGTGTACACTGAGACCGCCACCGGTTTTTTGTTTTTTGGTTTTTTTTAATGGGAATTGTTCTTGGTCAGGAGTGGGGGGAATCTATTTTTAAAACTCGCCACTGTAGACATTAATAGACTCTTCCCAGCCTTGCATCTCTAAGGAGAGTTTGCATATATTTATTGTTCTAAATGCTTGAGAAGTGGGTAGGTTCTTTGTGCTTAAAGCAGTGCCGTCTCTCTCCTGCAGAGGTTGGGAGAATAACTAGAGTGTGGGTTTGTGGAACTTTGCAGGGTCTGTATGTCTCCAGGGTCTTGAAAAATGGCACGCTGCCATGTGCATTGTATGGTTGGTCTTCTGGGGAAAGGTACTGTAAAAGCTGGGGCCAGGCTATGGTGGCATATGACTTTAATCCCAACACTTGAAAAGTAGAGGCAGGTGGATTTCTGTGAGTTCCAGGCCAGCTTGGTCTAGGGCAAATTCTAGGACAGCCTGGGCTACACAAAGAAACTCTGTTTAAAAAAAACAAAAAACGCCAGGCGGTGATGGCGCACTCCTTTATTCCCAGCACTCGGGAACAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTTGAAAAACCAAACCAAACCAAAACAAAACAAAAAACCAAACAGACAAAAGGAAAGGTATTCTGTTCCAGCCGGCACACTGGTGGTAAGGCCTGTGGACTCAGCGGTCCCAAGAGACAGCCCTTGCTGCAGACCTGCAGCAGCCAGATTTGTAGCTGTCAGAGCCGGAGTTTCTGCTTGCCCAGATGAGCCCAGGTTCTGATCGGAGGCATGCTGCCTGCTCCCCAGCACACTTCCCTGTAAGAACTCAGAGTAAACTGACATCTGAACAGCGAGCATATCTTTGCTGAAAAGTGGGTTGTATAAGCTGTGAGGCCTGTGCACGTCCCAGGTCATGATGGGGCAGGACCCTTGGTGTCTAAGACACAGAATTACCAAATGCTTTTTCTCAGAATAAAACTTAAATCTCATTTACCAAATTGGCTAGTGTTTCCCAGCCTGCATCTCATGAAGAGGCAGGAGAAATCACCCTTCAACCTGTCTTTCATATGAAATCTCTACCTCGTGGTTCCCTTCTGACCAGAGGTTCCTGATTGCTCTTCAGTACCGCACTTACTTTTCACAACAAGGATGTAATTATCTGACATCAAATGAAACTCCTTTCCTATGGAATGTTTTCTGTAGCCACCACTGAACATTGTTACTGCTCCTCTTCTCCACTCAGGCCTATTAAGAGTTGAGTATTATGCTTGGTACTTTGCAGAATCTAACAGAATTTTAAAGTGTTTTGAATAAAACAAATACTGTAAGAGGCATTATGTGGCAATTTTAAGAATGTAAGAGGGTGGCCCTGCTGTGCATTTGTACATCTGGGAATTTGAGCAATGAAATTCTTAGTTGGGAAATTCTTCCTCTCCCCCAAAAAGACTAATGGCTTCTTGACTTCTTTTTCTAGGACAAAGTTTTTGCATTAATATTAAATATAAAGCAGGCCTAAGATTGTCTAGGTGATATGCAGTTATGCTGGTGATAAACTGGGACAAGATTAAGCATGCTTTCACTCATGTAGTACTTACTGCCAGAGGTGATTGCTGCCTAGGTGAAATAATTTACCCTTCTATTCACTTTCAG
Seq C2 exon
AGATATGATCATAACAAGAATGATAAGATCCTTCCCATCAGCCTTGAGCCATCCTCAAGCACTGAGCCTGCTCAGTCTAACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026889-Rbm18:NM_026434:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.099 A=NA C2=0.119
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(25.7=65.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: