GgaINT0124743 @ galGal4
Intron Retention
Gene
ENSGALG00000028167 | RBM18
Description
RNA binding motif protein 18 [Source:HGNC Symbol;Acc:HGNC:28413]
Coordinates
chr17:8738420-8740415:-
Coord C1 exon
chr17:8740329-8740415
Coord A exon
chr17:8738506-8740328
Coord C2 exon
chr17:8738420-8738505
Length
1823 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
TACTAGTCTTCCATTTGCAGAGA
3' ss Score
7.13
Exon sequences
Seq C1 exon
GAAGCAGAAAAGGCGATCCAGTGTCTCAATGGGAAGCTGGCCCTTTCCAAGAAATTGGTGGTGCGGTGGGCACACGCACAAGTCAAG
Seq A exon
GTAAGCCTGTTGCTGTAGATAAAAATTAGTTTGCAAAGTCAAAAAAAACCTTAATATTAAGGACCAATTCTTACTAAGGCTGTCCTAGCTTGGCAAGATAATATCTGTCCGTTCTAGGAAATAACTCTCATGGAAACAGCATGAACAATATACCACTTCTCTTATCCTCCTGAATTAGCTGTGAATGAGAATAGGCTGTTTAACCTGATGTTCTTTGTAAAGATGCATCTCATCAGAGCTCCGTGAACTGATTACTTCTCTAAATTTCTGTTTTTCAACTTTTCCCAAACTTAGTGAAGGATTGGCTGAAAGACTGCATCCTTCCCTTTGTGGTTTTGCACCCTTTTTGGATAGGAGACGCATGGAAATTCCCAATTACTAAGCACTCTGTAACTTTGTTCCACTTCTGAAAGCACTTAACTGGCAGCAGCTATAATTATTCCTGACTTGTAAAGCAAGGTGTTTCATTTCTAAACTAAATATCATTTTATTGCTTGCTCTGCTGAATAAAACATCAAGTTTTTAACATTAAGTTGAGTACCTTCTGGAACATCCTTGTTTTACCGCCTCTGAATTCTTGTCTTGTTCCTCTGTTAGTTATTTACTCCAGCAGCTTATATAAAGCAACTTAGTTTGAATAACTGTCTTTGTAGAGAGAGAGTTTCTGGGGGAGACAGAGGAAGGTGCTTATTGTTATGTACCTTTGAGTAGTGTGATTTGAACACACATTGATCATCCTGTAATCAATGTGCTACTCTTTTTTTTTAATTGAGTATACCAGTGCATTTGTTTTGGAACCTTGAAGAAGAGTGGGGGGGGGGGGGGCAGGAAAGAAAAAGGAAAAGCAGGTATCTTTGTTAAAGGAGACCATGTTGTTTTAATTATTGGCTTTGAAGGCTCCAGGCCTTTGTCAGCACATCAGAACTTGTGCAAATCCAGTCTCCATTTTCTTGAGCGCTGCAGCTACTGGAGCACCATGTGCTTCCGGATGCCTGACGAGCGATCCATAAAAGGAGCTTCAGCTGGGGGAGAGTGTCTGCTCAGCTGGGAGTTCAGCAGGGTAGCTCAGTGTGCAGCCAGCCAGGGGATGGGGAAGAACATACATAAATAATCAGTTCAGCTCGCATGGCATTTTATAATCTGTGAATGGAAAGATTTAACGACACAAAACCTTAGCTTATTGCAGCAACTGTTTATTTTAGGCAATGACAGCACTGTGCTAAGTAGCTCTAAGATGAGCAGCCAAGGCTTACTAGACACTGTCAATTTGAGCAGCTCTGCTCAAAAACAAATCTGAATTTGTGCCAAGCGAAACAAGGAAGCAGAATGCTGCGAATAGTTCAGGAGGCCCATTGCCCACGGAGAAGACAGACTAACAAGCTGCTTCTCACAGAAAGGAGATGGCTCACAACTGATCCTGAATGTGTTTCTCTTCCATCACTGCATAATTCTGAATAGCTGTGTGCTTTGGTTACCTTCTCACTCGGAACAGTGTCTGTATAAACAGTGTAGTGATGCAGTACTGTGAAATTTAGCATTTGTCTTAGATAGATGGGAACAGAAAGTAACAAAACAGGATAAGACGTAAGGATTCGTAGAACGGTGCACATAAGTGTGCAGTATCAGAGTCCACGTTATCATGTTGGTACTCAACAAATATGGTTAGAATTTGTTGTGATGTTTGGCCATCAGAGTCAAATACTTCATAGTGAAGGATTCACAAAATCTGAGGTTATATTAATCCAAATATAAAGTGAATCTCTCAGCGAATGTTTTTGTTCATGACTCTAGTTTTGACTTCAATACTAGTCTTCCATTTGCAG
Seq C2 exon
AGATACGATCACAATAAGAACGAGAAGATCCTTCCGATCAGTCTGGAGCCATCGTCCAGCACAGAGCCACCCCAGTCCAACCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028167:ENSGALT00000044500:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.448
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(25.7=65.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]