RnoINT0125049 @ rn6
Intron Retention
Gene
ENSRNOG00000006763 | Rbm18
Description
RNA binding motif protein 18 [Source:RGD Symbol;Acc:1307411]
Coordinates
chr3:15448870-15450722:-
Coord C1 exon
chr3:15450636-15450722
Coord A exon
chr3:15448956-15450635
Coord C2 exon
chr3:15448870-15448955
Length
1680 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CTACCTTCTGTCCCTTTCAGAGA
3' ss Score
11.82
Exon sequences
Seq C1 exon
GAAGCAGAACAAGCCATCCAGTGTCTCAATGGCAAGCTGGCGCTGTCTAAGAAGCTGGTTGTGCGATGGGCCCACGCTCAGGTCAAG
Seq A exon
GTGAGTGTAAGGGAGACAGACACAAAGCACCCACCCTGGCTGAGTCTCTGATGAGTAGCCCAGCTCTCCATTACGTGCGGCCTGTTTGTGCCACAGCCGTGCTTTGCTCTCCTCCACTTGAATTGACTATGTGTCTCGCCAGACTTTTCTTTTGAAAGCTGTTGGAGAGGAAGCAAGTTCCCTCATTGTTTCTCTGCACATGCTCACAGGTCCTGCTGTGATTGATTTTTGCACGTGGCTTATGTGTACACTGAAGCCTCTGTCTTTTTTTTTTTTTTTAATGGGAATTGTTCTTGGGGTGGAGAGTCTATGACTCTTCCCAGCCTCACATCTCTAAGGAGAGTTCCCATGTATTTATTGTTCTAAACACTTGAGAAGTGGGTAGGCTCTTTGTGCTTAAAGCACTATAGTCCCTCTCCTGCAGAGGTTGGGAGAATGACTAGAGTGTGGATTTGTGGAACTTTGCAGGGTCTGTATGGCTCCAGGCCTTGAAAAGTGGCACACTGCCCTGTCCACTTTATAGTTGGTCTCTTGGGGAAAGGTACTGTAAAAGCTGTGGCCATTTTTTTTAAGGCATTCTAACCAGGCTATAGTGGCACACGCTTTAATCCCAGCACATAGAAGGCAAAGGCAAGTGGATTTCTGTGAGTTCAAGGCCAGCTTAGTCTACAGGGCAAATTCCAGGACAGCTTGGCCTACACAAAGAAACTCTAGTTTACAAAAACCAAAACAAACAAGCAAAAAGGTATTCTGTTCCAGCTGGCACGCAAGTGGTAAGGGGTGGACTCCAGCAGTCCCAACAGACAGCCCTTGCTGCAAATCTGCCAGCAGACGGACTTGCAGCTGTCAGAGCTAGAGCGTCTGCTCTCAGCTAGATGAGCCCAGGTTCTGATCTGAGCCGTGCTGCCTGCTTCCTAGCACACTTCCCCATAAGAACTCAGACTAAATTGACATCTGAGTAGCATGTCCCTGCTGAAAAGCAGGCTGTATAAGCTGTGAGGCCTGTGCACATCCCAGGTCGCGATGGGACAGGCACCCTCAGTGTCTCAGCTAAGTTTCTCATCCTGCATCTCAGGAAGAGGCAAACAGGAGAAATCACCCTTCATCCTGCCTTTCATATGAAATGTCTACCTCGTGGTTTCTTTTCTGACCAGAGGCCCCTGATTGCTCTCAGTGTCATACTTTTCACAACAAGTACGTAATTATTTGACATCAAATTAAACTCCTTTCCTCTGTCCAACATGGAGTGTTGTTACTACTCCTCTTCTCCAGCAGGCCGATTAAGCGTTGAGTATTATACTTGTTACTTTGCAGAATCTAGCAGAATTTTAAAGTGGTTTGAATAAACCAATACTGTAAGAAGCATTATATGGCAGGTTTAAGACTGTGAGAGGGCAGGCAGCCCTGCTGTGCATTTGTACATCTGTGAGTTTGAGCAATGAAGTTCTTAGCTAGGAAATTCCTCCTCTCCCCAAAAAGACTAATGACGAGATAGAAGCTTTTTCTGGACTTCTTTTTCTAGGACAAAATTTTGCATTAATATTAAATATAAAACAGGCCTAGGGCTGTCTAGCAATACGCTGGTGGTAAAATGGATAGGATTGGCATATTTTACCCGTGTTGGACTTCTGTCAGCTAACTTCTGCCTGGGTGAAGTAATCTACCTTCTGTCCCTTTCAG
Seq C2 exon
AGATACGATCATAACAAGAATGATAAGATCCTTCCCATCAGCCTTGAGCCATCCTCAAGCACTGAAGCTACTCAGTCTAACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006763:ENSRNOT00000009706:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.207
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(25.7=65.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]