HsaINT0138340 @ hg38
Intron Retention
Gene
ENSG00000119446 | RBM18
Description
RNA binding motif protein 18 [Source:HGNC Symbol;Acc:HGNC:28413]
Coordinates
chr9:122245256-122247604:-
Coord C1 exon
chr9:122247518-122247604
Coord A exon
chr9:122245342-122247517
Coord C2 exon
chr9:122245256-122245341
Length
2176 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGT
5' ss Score
10.75
3' ss Seq
TCTCTATTTCTCATTTTCAGAGA
3' ss Score
10.98
Exon sequences
Seq C1 exon
GAAGCAGAGCAAGCCATCCAGTGTCTCAATGGCAAGTTGGCCCTGTCCAAGAAGCTGGTGGTGCGATGGGCACATGCTCAAGTAAAG
Seq A exon
GTACGTCTGAGAGGCTAGAAAGACATCAAGCCTCATCCTAAACAAGCCTTCTGAAAGATGGTTGTCCACTTACCCGTTTATGTCCCAATCTCTTCACACCTGAAACAGCCATACTTCAGTCTCCTACTTGTATCTACCATGTGTGTTGCCCGATTTTTCTTTTGAAAACATCTCGGGAGGGATTAAGTTCCTTGGTTATTTCTCTCCACATGCCCACTGATCCTGGTTTTGATTTTCTCATGTGGCTAATGTGTACGCTCAGACCTCTGTCATTTCTTCGGGTGGAGGGTTCTTTGGAGGAAAATATATATTTATTTTTAAAATCAGTTGCTCTAGGCATTATTAGACTCTTCCCAGCCTTTGACTCTGTGGAGATTTGAATTTGTTTATTCTAAACGCTTGAGACATGGGTAGTTTCTGTGAGTGCTTAAAGCACTGGCATCTCCTTACTCCAGAAATCTTGGGAGTTACTAGGGTGTGGGTTCGTGGGACTTTGCAGTGTCTGTATTGTGTCTAAGTCCTGAGAAGTAGCAGGCTGCCCTGTTCATTCTGTAATTAGTCTCCTGGGAGAATGCGCTAGAAAAGCTTCAGCCATTAAAAAAAACAAAACAAATGGCATTCTGTTCCAGCTGGCACAGAGGTGGTAAAGTGTGTTGACTGGAGCGTTCCCAAGAGTTGATCTGCCTCCTTCTGCAGTGGGGACTTGAAAAACCTGCCTGCACAAAGATTTGTGACAGTTTTGAGTTGGAGCTGAAATCTTTAGCTCTAAGCATGGTTTTTGATCAGAGGCTCTCTACCCCACTCCCCAACAAACTTCCCAGTAAAGAGTCACAGAGACTAAACAAGACATTTAAGCTCAATGTCCAAGCTGAAAAACTAAGTTCAGATACTTTAGATCCTTCTGAGTATTTCAGGTAATCACAGAGCCTTCTCAATTTCTAGGACACATTGCCTTAAAAATAGAAACAACAAGGAGAATTACCAAATGCTTTTTTACTCAAGGGAAAATCAAGTCTCATTTACCAAACTCGTTTTCTCGTTCTGCATCTCATTGAAAAGGCACGCAAGAGAAATCATCCTCCATTCCTGTCTTTCATTTGAAAATCTCTGTGCCTCACGGTTCTCTTCTCCTATAAATCTTTTTTGACCAGAGGCTCTTGATTGCTCTTCAATATTATATTTGCTTTTTACAAGAAGTATGTAATTATCTGGCTAGGCATGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGAGGATCGCTTCAGCCCAGGAGTTCAAGACCAGCCTATGCAACATAGTAAGACCCTGTCTTTATTTTTTCTAATAAAATTTTAAAAGAATAAAAAAGTATGTAATTATCTGGCATCAAATTAAACTACTACTTTACTGTAGAATGTTTTCTGTATCAACAACTGAAAGCTGTTACAACTTTTATTCTTCACTCAGGCCTGTTAAGAGTTGAATATTATGCTTGGTTGGTACTTTGCAAAATTTAAAGGTTTTTTGTTTTTTGAGATAGGGTCTGGCTGTGTCACCCAGGCTGGAGTGCAGTGGCAAGATCTTGGCTCACTGCAACCTCTGCCTCCCAGGCTCAAGCAATCCTCTTACCTCAGCCTCCTAAGTAGTTGGGACTACAGGCATGTGCCAGCATGCCCGGGTAATTTTTGTTTTTTGTTTTTTTTTTTTAAATAGAGACAGGGTTTTTGCCATGTTTCCCAGCCTAGTCTCAAACTCCTGAGCTCAAGCAATCTGCCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCTGGCCAGTTTAAAGTATTTTTAATAAAATAAATATTGTAAGAGGTGATATGTGACAGTTAAGAATATAAGAAGGCCACCCTCCTGTGTGTTTGTACCATCTGAGATATTGAAAGTTGACATTTTTTTCCTACCAAATAAGGAGGAACTGATGGCTGGATGGAAGCTTCTTTTTCTAAACTTACAGCTTTTAGGCCAAAACCATGTGAAGTTTTTCATTAATTCTAAGTGTAAAGTGGTCCTAAAATTGTCTAGAAGTAAGCTGATGATATACTGATGGTATTAGTTTCTGAACCCATCCACTACAGTAAAGGGCTGGTTTCTGCCCATGTGAAGTAATTTCTCTATTTCTCATTTTCAG
Seq C2 exon
AGATATGATCATAACAAGAATGATAAGATTCTTCCAATCAGTCTCGAGCCATCCTCAAGCACTGAGCCTACTCAGTCTAACCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119446:ENST00000417201:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.431
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(25.7=65.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development