BtaINT0123386 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006168 | RBM45
Description
Bos taurus RNA binding motif protein 45 (RBM45), mRNA. [Source:RefSeq mRNA;Acc:NM_001130753]
Coordinates
chr2:18759171-18762713:-
Coord C1 exon
chr2:18762513-18762713
Coord A exon
chr2:18759418-18762512
Coord C2 exon
chr2:18759171-18759417
Length
3095 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
3' ss Seq
GTGTTGTGTTCTTTCTACAGAAC
3' ss Score
11.38
Exon sequences
Seq C1 exon
TCGTTTCGGTAACCTGATTGAAGTTTACCTTGTGTCAGGAAAAAATGTGGGGTATGCCAAGTATGCTGATAGACTAAGTGCTAATGATGCCATTACAACTTTACATGGAAAGATCCTGAATGGAGTCAGACTCAAAGTTATGTTGGCAGACTCCCCAAGAGAAGAATCTAACAAACGACAAAGAACTTACTGATTCTTTAG
Seq A exon
GTAAGGTCTTTATAATATAAATTCTAAAACACATTGTCTAAATAGTATAATGAAAGAAATATATAGGGAATTTCTTTTTAAGGATTTAGAAGTTGTTGGTTAAAAACACTGTGACTTAAAAGTTTGCTGATAATTTTACAATATATTTTTTAAACTTGGACTTTTTAAACTTAAAAGTCTTTTATGTTTACTGGGAGAATGTTTTTGTCCTTCTGTGAAATAAAATCAGATTTCAGTTTAGAAAATTAAATAGTATTTGTGTATGTGGTGAATGTCTTAGATATTAAGAATTGAACTTCACTGTATGGTTACATAAACTTTAAAATTAGAAGACTTCTAAAGATTTTTTTAGCTAACACCTAAGTTATCAATTGAGGTAATCTATGACAGTCTTTTGGAGAAGGGCGTGACAAACCACTCTAGTATTCTTGCCTGAAGAGTCCCATGGACACAAGAGCCTGATGGGCTACAGTCCATGGGGTCGTAAAGAGTCAGACACGACTGAAGCAACTTAGCATGCACATGACAGTCTTTATAAAGTATGCCTTGACAGGCATTAGTGAAATGCCTAAAAAGCAATATCTAATACAGTTGACCCTTGAACAATGCAAGTTTGAACCGCATGGGTCCACTGGACATGAGGATGTTTTCAGTAGTAAGTAATACAACACTAGATCTGAGGTTGGTTGGGTCCAAGGTTGGTTGAATCTGTGGACGCAGAACCGTGGGTATGAAATATCCACGTTTATAAAAGGGTTCACAGTAAGTGATATGCAGATTTTCAACTATGTAGAGGGTCACCACACCTAATGTCTACATTGTTCAAGAGTCAATTATAATGCATCTTTTTGGACCTAAATGGTATTTTTCTGGACTCATATTTGTGAATAAGTACATTAAAAGTACACATTCAGAAATAAGTGCATTAAAACTACACGTTCATGTACATATGTGTATTTTCAAAAATAACCTTGACGTTTATCAAAAGCTCTTGTCAGTTATACATAATGCTACGTACAGCCTTATGAGTGCCTTTTTTTTTTTTTTAACTATTAAGAAATCAAACCTAAATTTCTATCTATAGGACAGTTCACACCTCCGCAGTTGGGGGAAACATTATTAAAAGTTACCATTGTTCAGCTCTTTCACTTTTTTATTCTGGAAATGAATTCTGAGTTTCTGGGGAAGCTGAGTGCTTCCCTGTTCCCACGCACACACCCGCTCCCCAAGTCCACTGCTGGTCCAATTGGAGCAGCTGGTAAGCACATCCGATTCAGTTTGAAGTTACTAGCTCGAAAGCAGTTTTCTTTTCTCACCAATTATGAGAAATGGCGAGTATCAGAATGAATTGTCTGGGTCTTTACTATAGATGACTTTTCCTTGGATGAAGCAAGTCACATGATTACTTCCTCCTTGCAGAAGGCACTTGTGGATAGAAAGTGCCCATTGGGGCATTATGAATATCTCAATTTAGAAATATTTTCAAATGTTACAAAATCCACTCCCATTACTTCATACAGTGTAGAAATATTAAATTTGCCAGTGAAAAAGAATTAACAAGTCTTTCTTAAAGCAGTTTTTTGTCTTTACAAATAAAATGTTAAGAACTGAATTCTCTTTAGACAAGCTGTCTTCTAAAATAGCATGCAAACCTGCTTATTCATGTCTGTGAGTCTTCCAAAATATAGGTAGTAATTCTTACTCTTATTCAAAGAATCTTTGTCCTTAAAAGAGGACAATACTAACTTCTTAATATGGGGAAAATATATAAATGACTCCTGTGAGTGAGCCTTTTTATAAAATAATTATTTATATAGTATAGAGAATATTAGACTTAAAATCAGAAGATCTGGAATTGGGATTCCATCTCTGACACTTAATGATGATTTGGCAGTTATCTTCACCTTTCTGAGGCTGAGTTTCTCCACGGGATTATTAAGAGAAAATGAGTCGGCAAAATTTCTTATAAAATAAAATTTTTAAATACTTTGCAAGTGTGAGCTAAAACTCATGCATTGGTGACTTCATTGAAACTTCTTATGTCATCTCATCAAAAACGGTCAGAAATTAAGCTTAATGGTACAAAACCACCTTCTGGCCAGCAGGTGTGTGGGAATGAAACTTTAAAATAACATGTTTATTATCCAGTTCCCTAATTAGAGGAAGTGGTATTCTTCAGCATGACTAGTCATGAAATACAAATCTATCCTTTTTCCCTTTGTTGAGCGGTTATACATATTCAGTAGGGTCAAATGAATTGAAAATGGTAGGACATAATAAACTGTACTGGTTTTAAATGTCTTCTAGTTGCAGCACGGCTTTTTAATTTATTTTTGCTTTGAATCCTCATTTACTGTGGATTTCATAATGAAATTAGTCTCTGAGAAATAAGCCTAAGATTAGCTGAATTGTGCCTAGGAAATCGGAGAAGAAACTGGTCTAAGAATATCACTTTGAAAGTTGTTGAGTTCTATTTTGAGATAGATCTGATGTGCAAAATATGTTTCTCTTTCTATTTGAGGAAAACTCGAATTTTAGTATTTTAGAGCATCCTGATCTATGTGTGTGTGTGTGTTTATAGGTCCATTTCTTCCTTTTTTTAATCACATAAAACAGTTTGTACAACTGTTGCTTTTTTCACTTCCTCTGTTTTGTATCTTGACAGACTATTTTGAGGGAAATCCCTCTGAACTTTACCCTTGTTTCTCAATTATGATTGAACAATTATGGTTAATTGAGTTTAGCTACCTAAAAGAACAAAATATTTTAGCATACATGCTCTAGTTGGACTCATGGTTAAGAAGACAAATACAAGCACCCATTCAGTCAGCCTGGTGTGTGGGGATAAAACCCAAAGCTGTCATCCTCAAATGATGCATGATTTTTGTATGCATTTTCCCTCCCAAAATTCAGTACCCACTTGCATCATTCTTGTCAGTAGGTTTGGTTTTGCTTATTTGGGGGCATCTGTGATTAAGCAGGTAATATTGGGTATATTGAAATAAGGGAACAACTAACATTTTAAGAATACTATATACAACAGCTCTTTCCTTTCAGGTGATGACTTTCATGCTTGTGTTGTGTTCTTTCTACAG
Seq C2 exon
AACAAAGACTAAATAATGACGTACTCCTCAGCTGACTGACTGAAAATGTGACTGGACGCACTCCCTGTGGACAGTTGACGGCTTTTTTTTCACATACCTGATAGTTTGTACACAGCATTGTTTTGTCTGGGGAGTAGGATTGTTGACATGTGTTTTTCAACCACACATTAATGCTAAAACTAATATAGTAGTTGTTTCTTAGAGTAATATGTTGTTACGTGTGGCAGAAATAAAGTTTTCTTTGGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006168:ENSBTAT00000008111:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.188 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF138931=RRM_5=PD(90.7=75.4)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]