RnoINT0125238 @ rn6
Intron Retention
Gene
ENSRNOG00000010595 | Rbm45
Description
RNA binding motif protein 45 [Source:RGD Symbol;Acc:628862]
Coordinates
chr3:63232241-63235648:+
Coord C1 exon
chr3:63232241-63232441
Coord A exon
chr3:63232442-63235349
Coord C2 exon
chr3:63235350-63235648
Length
2908 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
3' ss Seq
GTATTGTGTTCTTTCTACAGAAC
3' ss Score
10.43
Exon sequences
Seq C1 exon
CCGTTTTGGGAACCTGATTGAGGTCTACCTTGTGTCTGGGAAAAATGTGGGCTATGTCAAGTATGCTGATAGAATGAGCGCCAATGACGCCATCACAACTCTGCACGGGAAGATTCTAAATGGGGTCAGACTTAAGGTTATGCTGGCAGATTCCCCAAGAGAAGAATCCAAAAAGAGGCAGAGAACTTACTGAGTCTTACG
Seq A exon
GTAAGTGTTCCTTACCCACTAGCGAAGGAGTCTAGCAAAAGGAACATCTGTAAGTATTTCACTTGTGAGATTTTTCTTCTGGGGACTTCAGAAGCTATCTAAAACCATGTTGGCTTAAAACTCTATTTAAAAAGCAGTATATTTTGTTAATTTATTTAAATTGTTTAAATTCAGGGCTGGAAAGATGGATTAGCAGTTAAGGGTGCTTGCTGCTCTTCCAGAGGACCCACGTCATGCTGTTTTTGGCACAGTGTAGGGCAGTGTTTCTCAACCTCTGGGTCAACCCTTTGGGGTCGGCTAGGACCATCAGAAGACACATCTCTACATTACGATTCATGACAGTAGCAAAATTATCGTTATGAAGTAGCAATGAAACTAATTTTGGGGGTATCCAGTGTTTTCTTCTGAACACTGTGAACATATTCAGTCATGTATACCCACCCACAGACACACACACGCACACACACACACCATAGTAAAATATGTCTTTAACAAAATCTTTTGATGTCTTACTACTTTATACTGAAAAACAGTATGAAATTATATATAAATATACATTTGAACCTTTTAAACCTAAATATTAGTGTCTTTCCAAATTCAAACTCTTGAGTTTGCACTTTAAAAGTATATGTTTAGAAAATATTTTCATGTGCATTGGTGTATTTTAAAGAACTCTGACCATTTGCTAAGCCCCTTCTTTAGGAATACTGGTAGAACATATGAATTCTATTATCTATGGGTTAGTTTTCAAAGCTCAATCTTCTTTTTCTGTGGTGGGTTATATCTATGACTTCAAGGAGACGTCATCTTTAGCTCACTTTCCTCTAAGGAATTCTGAGTCTCAGAGACAGTTTGTTTCCTGGTCCTACACTCATCATCCTCCCAGCCCTGCTCCATGTCAGATGCGTCCAGCTCTGACCCATGCTGTGAACAAGTTACTATCAGAATTAATCACCGTAGGCCTCACTGTTGAAGACCCTTCTTTTGTAGAGCAAAGCAAGTCATTAATTCCTACTTCATAAAAAGGATTTTGCGGTGAGAAATGCCCACTAGGCCCACTAGAAATTATCCTGCTTTAAAAGTGCTTTTAAATATCTTATTTAATGATGAAATTCATACTCCTTACACTAAACAGTTTGGCAGTTTAGCTCTAAAAATATTCCGTTACCAGTGAAAGAGAATTAGCTTTCTTGTTTACTAATAAGATGTTAATAATTTAATTCTGTTTAAATAAATAGCCCTTGAAAGTATAATGTGAAAATCACAGTTATCCTTGTGTTTAAATATTTTAGTATGTAGGAGACAATTATTGCTTTTGCTCAGGGAATCTTTGCCCTTTAAAAGGGCAATGATACTGACTTTCTAGTATGGGAAGATATACAAAGTACTCTTGTGGTTGAGCCTTTCTAATGATAATTTACATTTTAAAGGGAATTATTGGCCTGTAATCTCAGCACCCGGGAGACTGGAGCAGAAATACCGGGTGGGAGGTTAATGTGGATGTGAAAGGAGAGCTATAAAGAGAGGGTGTGAATGAGAGAGGAGCAGACGTGGACTACGCCCACCACAAACACGTAAATAACCTGTGTAGTTCTCTTCAGGTTTCAGAGACCGGGTTTCTTCTGGGTTCCTTGAGAGTCATCGAGATAGCAGAATTCCTGATAAAATGAAAGAAAAGCTTTGTAAATGTGAACTAAAACCATTATATTTATGGCTTTAGTGGAGCCTTTCAGATGTCACCTCATACAAATGATGAGAAAGCAACAGCTTAATGGTGACAGAAAAAAGATGGTGCAGAAGTCCCTCCCACCAGCTGGTCCTGAGAGCCACACTTTAAAGTAGGGCAGCTTCACCTTCATAGTGATGCATGGTTTCCCAGTTAAAGGACTACACAGTTTTCAGCATGGCGAGCCACCAAACGTTTATCATTACTCAATTTTGATACATATTCAGAGCAGAGATCAAAAGGAGTCAAATTATTTGACGATGGTGAGAGATCATTAGGGTAGACATAACTATAATGTGGATGTCTTCTAATCGCACCATGGCTTTTGTTTTTGTTGCACATCCTCTGTTTACTGTGGATAGCATAGAGAGATTTTCTACCTTTAGGCATGCATTAAATAATTATGTTGGCTGGGGTTGGGGATTTAGCTCAGTGGTAGAGCACTTGCCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAATCAAAAAAAAAAATTATGTTGGCCAAGTGTGGTGGCCTGAGCCTGTAGTTACAGTTCTTCAGAGACTGAGGCAAGAGAGTCATATAAACTCCAGAGCTCAAGGCCAGCCTGGAAGACATAGTGAGACCCCTGTAGTGAGACCCCCGTATCAATAAGTGAATTACCTTTTTTAAAAGTTCAGCAGAAGAGTATGATAGACGCCCACAGTTAGCATAATCATGACAGCAGGGGTTTTTGTGGTTGGTGCACTGTTCATTTATCTCTAATAGGACACAGCTCCTGGATGCTGGTTGCCCTTTGTCTCTGAGGAATGAGCCTGGGACTAAATGAGCCACACCTAAGAGATAGAAAACTGGTCTAAAAGTCGAAGCTGAAAGTAGTTGAGTTCCCTTCTGAGATGAGTCTTGTGTCTATAATGTATCTCCCTTTCTATTAGTGGAATATTTTCATATTTCAGAGCATCTGCTTTTAAGTTAGTTTACAGGATTTTCCCTGTAGAACTGCAGTACCTGCCAGCATCCGCTCGAAGTAAGTCTGGTCTTGTGTACTCGGAGGCATTTATGATGAACCAGGTCAGACTGGCCATAGAGAGGCTAAGGAAATCCCAACAGAGTGGGATACTAAGTACATCAGCCATTCCCTTGCAGGTGATGACTCTCATCCTTGTATTGTGTTCTTTCTACAG
Seq C2 exon
AACAAAGACTAACTAATGACATAATCCTCAGCTGACTGACTGAAAACCTGACTGGACGAACCCCTGTGGACAGTTGACAGCTTTTTTTTTCTTTTCCTCACATATCTGATAGTCTACACACCATTGCCTATCTGGGATCGCTGACATGTATTTTTATCTGACCTTAATGGTAAAATTAATATAGTAGTTGTTTCCTAGAACAAAATGTTGCTGTGTATAGCAGAAATAAAGCTTCCTTAGAGAAATATGTTGTCATGTATAGCAGAAATAAAGTTTGCTTTGTATAACTAACTCACGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010595:ENSRNOT00000042968:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.141 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF138931=RRM_5=PD(90.7=75.4)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]