HsaINT0138582 @ hg19
Intron Retention
Gene
ENSG00000155636 | RBM45
Description
RNA binding motif protein 45 [Source:HGNC Symbol;Acc:24468]
Coordinates
chr2:178990711-178994382:+
Coord C1 exon
chr2:178990711-178990911
Coord A exon
chr2:178990912-178994123
Coord C2 exon
chr2:178994124-178994382
Length
3212 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
GTGTTGTGTTCTTTCTACAGAAC
3' ss Score
11.38
Exon sequences
Seq C1 exon
TCGTTTTGGTAACCTGATCGAAGTTTACCTTGTGTCAGGAAAAAATGTGGGGTATGCCAAGTATGCCGATAGAATAAGTGCTAATGATGCCATTGCCACTCTACATGGAAAGATTCTGAATGGGGTGAGACTTAAAGTTATGCTGGCAGATTCGCCAAGAGAAGAATCTAACAAACGGCAAAGAACTTACTGATTCTTGAG
Seq A exon
GTAAGCCCTTTTTAATCTGAATTTTAAAACATATTGAGTAAATAGTATATGAGGAATATGTGTAAGTACTTTATAAACTTTTCTTTTTAGTGATTTAGAAGTTGTCAGTTAAAAGAGCTTTGCAACTATTTAAACTTTAAAAATTGTTGACATTTACTGAAGAATGTTTTTGCCCTTCTGTAAAATAAAATCACATTTCAATTTAGAAAGATAAATAATTGTTTTTTGTTTGTGAAATCTTCGATTTTAAGAATTCAACTTTTTATTATGTGCTTATATAAACTTTTAAGTTGTCCGGTGCTAGAATAAGGATTGCTTTAAAAAAAAATTGAAATACTTCTAAAGATTTTTAACTTGAAAAATTGGTGTCTTGAGTTATGAATTGAGGTAATTTATAACAGTCGTTTATAAAGATAATGTTTTGACTTCTCTCTAATGAAATGCCTAAAAAGCAATATCAAATAATATATCATTTTTGGACCTTTTGAACCTAAATGTTGGTGTTTTCTGGACTTGTATTTGTGAGTTTGTGCATTAAAACAATACATTCAGAAAATATTCTCGTATGCATATATGTATTTTTTAAGAAAACCTGACAATTTACCAAAAACTCTTTATTGTAAATTTTGATACATACAGCCATATGAATTCCATTTCCTATTTTATTTATTAGTTTTCAAAAATCAAACTACAATTTATTTGACTGTGACAGTGAGTTTATATCTGTGTGGTTTGGGGAAACATTCCTTAAAGTTTGACTTTTTTTTTCCCCCGAGACGTCTCGGTCTGTCACCCAGGCTGGAGTGCAGTGGCGAGATCTCGATTCACTGCAACCTCCACCTCCTGGATACAAGTGATTCTTCTGCCTCAGCTTCCCCAGTAGCTGGGACTACAGGCGCGTACCACCACGCCTGGCTAATTTTTTGTATTTTTAGTAGAGGCGGGGTTTCACCGTGTTTCGATCTCCTGACCTCATGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCGCCTGGCCTAAAGTTTGGCGGTTTTTATTCTGTAAAATAATTCTGAATTTCAGGGGAAGCCGTTTTCCTGTTCCCACACACTAACTTTCCAAGTCTACTATAGGTCAAATGTAGTAGATGGCAGGCACTTTGAATTCAGTTTGAAGTTACTGGCTTGAAACCTTTATTTTTTTCACTTAAGATTTTCTTTCTGACCAATTGTGTGAGCTAGCACGTATGAGAATGATTCCTGCCAGGCCTCACTGCTGATGACCCTTCCTCTCCTAGAACAGATCACATGATTAGTTCCTCCTTCATAGCTTCATAGAAGGCATTTGACAAGAGAAAGTGCCCATTGGGCCCATAATCCTAATTTTTAAATCTTTTTAAATGTTTTATTAAATGACAAAACCACTCTCATTGTACCATACATTGTTAGCAATTTAACCCTGGATATATTAAATTGGGAGTGGAAAAGAATTAGCAAGCATTTTTTCCTGTTTATGGATAAAATGTTAAGAATGAATTCTGTTTGGAGAAGCTATTCTCTAGCATGCAAAAAATGTGTTTTTTCTAGTCTGTGAATATTTCAATAATAGGAAATAAATAGTTCTTGCTTTTACTCAATAAATCTTTGTTCTTAAAAAGGACAATAATATAGACTTTAGACTTCTCAGTATAGAAAAGTATATAAATTATTCTTGTGGTTGAACCTTTTCTAATGATTATTTACATGTTAAAGAGAATATTGGGCTTAAAATAAAAAGCCATTTAACTGTGACTGGGCTGGTCTCTACGCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACACAGAATCTTAGTCTGTCACCCAGGCTGGAGTGCAGTGGCCTGATCTCAGCTTACTGCAGCCTCTGCCTCCTGGGCTCAAGCAGTCCTCACAGCTCAGCCTTGCAAGTAGCTGGGACTACAGGCATGTGCCACCATGCCCAGGTAATTTTTTTTGGTAAGACAGGGTTTTGCCGTGTTGCCCAGGCTGGCCTTGAACTCCTAAGCTCAAGTCATCTGCCTTCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAACCACTGCGACTGACCCTCTTTGCCTTTTTGAGGCCCAGTTTTCTCATAGGGCTTTTGAGAGACAATGAGTCAACAAAATGTAAAATGAAAAAAAGGCTTTGCAAGTCTAAACTAAAACTCTTGCATTTGTAGCTTCAGTGAAACCTTTGAGATGTCCTCTTATCTAAAATAATGACATCCAAATGATCAGAAACTAAAAGTATAATGATATAAAACTACCTTGTGGCCAGTTGGTACTGTGAGAACTAAGCTTTATAAATACCACATTTTTCCCTTAAACTCATCCAATTTCCTACATCAGAGGAATTGCATTTTCAGCATGGCTGTTCATAAAAATTTTAATCTATCATTTTTCCCTTTTTTGAACTGTTACGCATATTCAGGGCAGAGATAAAATAGGGTCAGGTTAGTTGAAAATGGCTGTTTGGATAGGATACGATTAGCTACACGGTTTTGAATTTCTTCTAATTGCAGCATGGCTTTTTTTATTTTTGCTGCGGATCTCCTATTTACAATGGACTCCATTATGAGATTCTTCTTCTTTGTTGGTGTATTAAATAAACATATTACCTTATTTTAAGTTTCGATAAAATACTGTGGAAGACTTTGCCAAATTTTATATGATTGTGACAAGTTTTTTGGGGTAGGTGCACTTTTTTGTTTGTTTCTTTAATTTTTAAAAGGCTGCAAACACAGCTCATGAAGGCTGGTTTCTTTTATCTCTGAGGTATGGGCCTGGGATTAAGTGAGTCATGCCTAGGAAATAGAAGCAACTGATCCAAGGATATAACATTGAAAGTAGTTGAATTCTATTTTGAGATGGGTCTGATAACCACAATGTAATTCTCTTTCTATTTGAGGAAAATATAAATTTTAGTATTTCAGAGCATCAGATTTTTTGTTAATTCACAACACTTTCCCTCTAGAAATTCAGCACCTGCATCGCCCTTCTTAGTAAGTTTGGTTTTATTTGGGGGCAGCTATGATTAAGCAGATAACATTGGGTATATTGAAATAAAGGAACAATTCCTAACATTTTAGGAATACTACAACAGCTATTTCCTTTCCTTTCAGGTGATGATTTTCATACTTGTGTTGTGTTCTTTCTACAG
Seq C2 exon
AACAAAGACTAAATAATGACATAATCCTCAGCTGACTGACTGAAAATGTGACTGGACGCATTCCCTGTGGACAGTTGACAGCTTTTTTTTTTTCCATATACCTGATAGTCTGTGTACAGCATTGTTTTGTCTGGGAAGCAGGGATTGCTGACATGTATTTTTGAATCCATACATTAATGCTAAAACGAATATAGTAGTTGTTCCTTAGAGCAATATGTTGTTACGTGTAGCAGAAATAAAGTTTTCTTTGCTTAACTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000155636-RBM45:NM_152945:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF138931=RRM_5=PD(90.7=75.4)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)