HsaINT0138582 @ hg38
Intron Retention
Gene
ENSG00000155636 | RBM45
Description
RNA binding motif protein 45 [Source:HGNC Symbol;Acc:HGNC:24468]
Coordinates
chr2:178125984-178129656:+
Coord C1 exon
chr2:178125984-178126184
Coord A exon
chr2:178126185-178129396
Coord C2 exon
chr2:178129397-178129656
Length
3212 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
GTGTTGTGTTCTTTCTACAGAAC
3' ss Score
11.38
Exon sequences
Seq C1 exon
TCGTTTTGGTAACCTGATCGAAGTTTACCTTGTGTCAGGAAAAAATGTGGGGTATGCCAAGTATGCCGATAGAATAAGTGCTAATGATGCCATTGCCACTCTACATGGAAAGATTCTGAATGGGGTGAGACTTAAAGTTATGCTGGCAGATTCGCCAAGAGAAGAATCTAACAAACGGCAAAGAACTTACTGATTCTTGAG
Seq A exon
GTAAGCCCTTTTTAATCTGAATTTTAAAACATATTGAGTAAATAGTATATGAGGAATATGTGTAAGTACTTTATAAACTTTTCTTTTTAGTGATTTAGAAGTTGTCAGTTAAAAGAGCTTTGCAACTATTTAAACTTTAAAAATTGTTGACATTTACTGAAGAATGTTTTTGCCCTTCTGTAAAATAAAATCACATTTCAATTTAGAAAGATAAATAATTGTTTTTTGTTTGTGAAATCTTCGATTTTAAGAATTCAACTTTTTATTATGTGCTTATATAAACTTTTAAGTTGTCCGGTGCTAGAATAAGGATTGCTTTAAAAAAAAATTGAAATACTTCTAAAGATTTTTAACTTGAAAAATTGGTGTCTTGAGTTATGAATTGAGGTAATTTATAACAGTCGTTTATAAAGATAATGTTTTGACTTCTCTCTAATGAAATGCCTAAAAAGCAATATCAAATAATATATCATTTTTGGACCTTTTGAACCTAAATGTTGGTGTTTTCTGGACTTGTATTTGTGAGTTTGTGCATTAAAACAATACATTCAGAAAATATTCTCGTATGCATATATGTATTTTTTAAGAAAACCTGACAATTTACCAAAAACTCTTTATTGTAAATTTTGATACATACAGCCATATGAATTCCATTTCCTATTTTATTTATTAGTTTTCAAAAATCAAACTACAATTTATTTGACTGTGACAGTGAGTTTATATCTGTGTGGTTTGGGGAAACATTCCTTAAAGTTTGACTTTTTTTTTCCCCCGAGACGTCTCGGTCTGTCACCCAGGCTGGAGTGCAGTGGCGAGATCTCGATTCACTGCAACCTCCACCTCCTGGATACAAGTGATTCTTCTGCCTCAGCTTCCCCAGTAGCTGGGACTACAGGCGCGTACCACCACGCCTGGCTAATTTTTTGTATTTTTAGTAGAGGCGGGGTTTCACCGTGTTTCGATCTCCTGACCTCATGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCGCCTGGCCTAAAGTTTGGCGGTTTTTATTCTGTAAAATAATTCTGAATTTCAGGGGAAGCCGTTTTCCTGTTCCCACACACTAACTTTCCAAGTCTACTATAGGTCAAATGTAGTAGATGGCAGGCACTTTGAATTCAGTTTGAAGTTACTGGCTTGAAACCTTTATTTTTTTCACTTAAGATTTTCTTTCTGACCAATTGTGTGAGCTAGCACGTATGAGAATGATTCCTGCCAGGCCTCACTGCTGATGACCCTTCCTCTCCTAGAACAGATCACATGATTAGTTCCTCCTTCATAGCTTCATAGAAGGCATTTGACAAGAGAAAGTGCCCATTGGGCCCATAATCCTAATTTTTAAATCTTTTTAAATGTTTTATTAAATGACAAAACCACTCTCATTGTACCATACATTGTTAGCAATTTAACCCTGGATATATTAAATTGGGAGTGGAAAAGAATTAGCAAGCATTTTTTCCTGTTTATGGATAAAATGTTAAGAATGAATTCTGTTTGGAGAAGCTATTCTCTAGCATGCAAAAAATGTGTTTTTTCTAGTCTGTGAATATTTCAATAATAGGAAATAAATAGTTCTTGCTTTTACTCAATAAATCTTTGTTCTTAAAAAGGACAATAATATAGACTTTAGACTTCTCAGTATAGAAAAGTATATAAATTATTCTTGTGGTTGAACCTTTTCTAATGATTATTTACATGTTAAAGAGAATATTGGGCTTAAAATAAAAAGCCATTTAACTGTGACTGGGCTGGTCTCTACGCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACACAGAATCTTAGTCTGTCACCCAGGCTGGAGTGCAGTGGCCTGATCTCAGCTTACTGCAGCCTCTGCCTCCTGGGCTCAAGCAGTCCTCACAGCTCAGCCTTGCAAGTAGCTGGGACTACAGGCATGTGCCACCATGCCCAGGTAATTTTTTTTGGTAAGACAGGGTTTTGCCGTGTTGCCCAGGCTGGCCTTGAACTCCTAAGCTCAAGTCATCTGCCTTCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAACCACTGCGACTGACCCTCTTTGCCTTTTTGAGGCCCAGTTTTCTCATAGGGCTTTTGAGAGACAATGAGTCAACAAAATGTAAAATGAAAAAAAGGCTTTGCAAGTCTAAACTAAAACTCTTGCATTTGTAGCTTCAGTGAAACCTTTGAGATGTCCTCTTATCTAAAATAATGACATCCAAATGATCAGAAACTAAAAGTATAATGATATAAAACTACCTTGTGGCCAGTTGGTACTGTGAGAACTAAGCTTTATAAATACCACATTTTTCCCTTAAACTCATCCAATTTCCTACATCAGAGGAATTGCATTTTCAGCATGGCTGTTCATAAAAATTTTAATCTATCATTTTTCCCTTTTTTGAACTGTTACGCATATTCAGGGCAGAGATAAAATAGGGTCAGGTTAGTTGAAAATGGCTGTTTGGATAGGATACGATTAGCTACACGGTTTTGAATTTCTTCTAATTGCAGCATGGCTTTTTTTATTTTTGCTGCGGATCTCCTATTTACAATGGACTCCATTATGAGATTCTTCTTCTTTGTTGGTGTATTAAATAAACATATTACCTTATTTTAAGTTTCGATAAAATACTGTGGAAGACTTTGCCAAATTTTATATGATTGTGACAAGTTTTTTGGGGTAGGTGCACTTTTTTGTTTGTTTCTTTAATTTTTAAAAGGCTGCAAACACAGCTCATGAAGGCTGGTTTCTTTTATCTCTGAGGTATGGGCCTGGGATTAAGTGAGTCATGCCTAGGAAATAGAAGCAACTGATCCAAGGATATAACATTGAAAGTAGTTGAATTCTATTTTGAGATGGGTCTGATAACCACAATGTAATTCTCTTTCTATTTGAGGAAAATATAAATTTTAGTATTTCAGAGCATCAGATTTTTTGTTAATTCACAACACTTTCCCTCTAGAAATTCAGCACCTGCATCGCCCTTCTTAGTAAGTTTGGTTTTATTTGGGGGCAGCTATGATTAAGCAGATAACATTGGGTATATTGAAATAAAGGAACAATTCCTAACATTTTAGGAATACTACAACAGCTATTTCCTTTCCTTTCAGGTGATGATTTTCATACTTGTGTTGTGTTCTTTCTACAG
Seq C2 exon
AACAAAGACTAAATAATGACATAATCCTCAGCTGACTGACTGAAAATGTGACTGGACGCATTCCCTGTGGACAGTTGACAGCTTTTTTTTTTTCCATATACCTGATAGTCTGTGTACAGCATTGTTTTGTCTGGGAAGCAGGGATTGCTGACATGTATTTTTGAATCCATACATTAATGCTAAAACGAATATAGTAGTTGTTCCTTAGAGCAATATGTTGTTACGTGTAGCAGAAATAAAGTTTTCTTTGCTTAACTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000155636:ENST00000286070:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF138931=RRM_5=PD(90.7=75.4)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development