MmuINT0132855 @ mm10
Intron Retention
Gene
ENSMUSG00000042369 | Rbm45
Description
RNA binding motif protein 45 [Source:MGI Symbol;Acc:MGI:2387367]
Coordinates
chr2:76380365-76383768:+
Coord C1 exon
chr2:76380365-76380565
Coord A exon
chr2:76380566-76383454
Coord C2 exon
chr2:76383455-76383768
Length
2889 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
GTGTTGTGTTCTTTCTACAGAAC
3' ss Score
11.38
Exon sequences
Seq C1 exon
CCGTTTTGGGAACCTGATCGAGGTCTACCTTGTGTCGGGAAAAAATGTGGGCTATGTCAAGTATGCCGATAGAAAGAGCGCCAATGAGGCCATCACAACTCTGCACGGGAAGATTCTGAATGGGGTCAGACTTAAGGTTATGCTGGCAGATTCCCCAAGAGAAGAATCCAAAAAGAGGCAGAGAACTTACTGAGCCTTAAG
Seq A exon
GTAAGTGCTTCTCACCCACTAGCGAAGGAGCCTAAGAAAAGGACCGTCTGTAAGTATTTCACTTGTAAGCTTTCCTTCTGGGGACTTCAGAAGCCAGATAAAACCATGTTGGCTTAAAACTATTAATAAAGCCAAGTTCTTCTTTCAATATATTTTGTTAATTTAAAATTGTTTAAATTCAGGGCTGGAAAGATGGATTAACAGTTAAAGGTGCTTGCAGCTCTTTCACAGGACCCACATCAGGCTGCTTCTATAACCACTTGTATAGACCTTACAGTCTAGAGCAGTGTTTCTCAACCTGTGGTGTGCAGCGACCTGAGACCATCACAAGACAAATCTATACATTATTATTCATAACAGTAGCAAAATTGCCATTATGAAGTAACAATGAATCTAATTTAGGAGTCACCACAGTATGAGGAACTATACTAAAGGGTCACAGCATTAGGAAGGTTGAGAACCACTGCCCTAGGGCACTCAGTGCTCTCCTCTGAACTCTGTGAACATACTCAGTCATGTATACATATTCACAGACAGACAGACAGACGTGTACACGTGCACACACACATATCTATATATATCTCTATCTATCTATATATATACATGGATATGTCTTTTAAAAAGTAATCTTGTGATGTCTTACTATCTTCATACTGAAAAACAGTATGAAATAATGTATATTTTTGTACCTAAATATTAGTGTCTTTCCAGACTCAAACTTTTGAGTTTGCACATTGAAAGTATATGCTCAGAAAGTACTTTCATGTGCATCTGTGTATTTTTAGAGAACTCTGACCATTTGCTAACCTCCATTTCTATGAATACTGATATAACACAGGTATTCTTTTTCCTACGGGTTAGTTTTCAAAGCTCAATCTTCTTTCTCTGTGCTGAGTTATATCTCTGACTTAAAGGAGACGTCATCTTTGCTTTCCTCTAGTGAATTCTGAGTTTCAGAGACTGTTTCCTGTTCCCTCACTCATCATCCTCTCAGCCCTGCTCCACGTAAGGAGCGTCCAGGTCTGGCCAAAGTTGTGAACTAGGAGCTTGGAATTAGTCACTGCAGGCCTCTCCGGTGAAGACCCTTGTTTTGTAGAGCAAAGCAAGTCATTAGTTCCTTCTTCATGAAAAGCATTTGGCAGGGAAAAATGCCCACTGGGCCCACTAGAAATAATCCAGCTTTAAAAGTGCTTTTAAATATCTTATTTAATGATGAAATTCACACTCATTACACTAAACAGCTTGGCATTTTAGCTCTAAAAATATTCTGGTACCAGTGAAGAGTTAGCAAGCAAATTTTCTTGTTTGCTAATAAGATGTTAATAATTTAATTCTGTATAAATAAATAGTCCTTTAAAGTATAATGCAGAAATTACACTTACCCTTGTGTTTAAATATTTTAGTATGTAGGAGATAATTGCTGCTTTTGTTCAGGGAGTTTTTGCCCTTTAAAAAGGCAAGATATTGACTTCATAGTATGGGAAGATATACAAAGTGGTCTCAAGGTTGAGCCTTTCTAATGATAATTTACATTTTAAAGGGAATTATTGGCTTGTAATCTCAGCACCCAGGAGACTAGAGCAGAAATGTTGAGTGTGGGGCTGGTGTGGGTGTGCAGGGAGAGCTTTAGAGAGAGGGAGTGAATGAGAAGGGAGCAGAGATGTGCACTAGGTCCACCTCGAACAGAACAAGGAAAGCTGTGTAGTTCTCTTCAGATTTGAGAGAACTCAGGTTTTGGCTAGGTTCCTTGTTAGAGACTGGGACAGCCAAATTCCTGATTAAAGGAAAGAAAAGCTTTGTAAATGTGAACTAAAAAGCCTTATATTTATGGCTTTAGTGGAACCTTTCAGACGTCATCTTATACAAATGATGAGAAAGGAAAAGCTTAAGGGTGAAGGGGGAAAAAGATGGCGCAGAAGTCCCTCCCCACCAGCTGCTACTGAGAGCCAAGCTTTAAAGTAGGGCAGCTTTGCCTTCATAGTGATGCAGGTTCACCTGGCTTCCCAATTAAAGGAACTACATGGTTTTCAGCATGGCTAGCCATCAGCGCTTTTACCATTATTGAATTTTGATACATATTCAGGGCAGAGATCAAAAAGGGTCAAATTACTTGAAAATGGTGCGGTGGTTAGGATAGAAATAGCTATAACTTGGATGTTTATACCATGACTTTTGTTTTTGTTGCACATCCTCTATTAACCATGGATTGCATAGTGAGATTTTCTACCTTTGGGGTGCATTAAATAATTTTATTAGTCAAGAGTGGAACCCTGAACCTATAGTTGTAGTTCTTCAGAGACTGAGGCAGGAGAATCATAGAAACTGCAGAGCCTGGAAGACACAGTGAGACCCTGTATCAATATGTGAATGATCTTTTTTTAAAGGTTCAACACGATAGTATGATAGACTCCCACATTTTACATGTCATGACAGGAGGGATTTCTTCGGTGTGGTTGGTGCACTGTTCATTTAGCTTTTATAGGACGCACCTCCTGCCTGCTGGGTGCTCTTGTCTCTGAGGAATAAGCCTAGGATTCAGTGAGCCCCACCCGAGAGATCTAAGAGCCAGTGTTGAAAGTAGTTGAGCTCCCTTTTAAGGTGAGTCTTGTTTTTATATTTCTCTTTCTGTTAGCGGAATATAGACATTTTACTATTTCAGAGCATCTGGTTTTAAGTTAATTTACAGACTTTTCTCTCTCACAATGCAGTCAGTATCTGCCAGCATCAGCTCTCTAAGTAAGTCTGGTCTTGTTTACTTGGAGGCATTTATGCTGAACCAGGTCAGACTGGCCACGCCACGGAAGGTTACAGAGCTCCCGACAGTGAGGGATGCTAACTACATCGGCTGCACGTGATGATTTTCATCCTTGTGTTGTGTTCTTTCTACAG
Seq C2 exon
AACAAAGACTAACTAGTGACATAATCCTCAGCTGACTGACTGAAAACCTGACTGGACGAACCCCTGTGGACAGTTGACAGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTATTTTCTTACATATCCGATAGTCTTCACACCATTGCTTATCTGGGATCGCTGACATGTATTTTTGTCTGACCTTAATGGAAAAATTAATATAGTAGTTGTTTCCTAGAACAAAATGTTGTTGTGTATAGCAGAAATAAAGCTTCCTTAGAGAAATATGTTGTCATGTATGGCAGAAATAAAGTTCGCTTTGCATAACTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042369:ENSMUST00000046389:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF138931=RRM_5=PD(90.7=75.4)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types