GgaINT0047210 @ galGal3
Intron Retention
Gene
ENSGALG00000009202 | RBM45
Description
NA
Coordinates
chr7:16630758-16633868:-
Coord C1 exon
chr7:16633672-16633868
Coord A exon
chr7:16631050-16633671
Coord C2 exon
chr7:16630758-16631049
Length
2622 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TACTTGTGTTTTTTCTACAGAAC
3' ss Score
9.69
Exon sequences
Seq C1 exon
TCGTTTTGGAAATTTAATAAAAGTTTACCTTGTGGCTGGAAAAAATGTGGCCTATGCAAAGTTTGCAGACAGAGCAAGTGCCAGTGAAGCCATAACTGCGTTACACGGCAAGATTGTGAATGGTGTCAGACTTAAAGTAAGGTTGGCAGACTCCCCCACGGAGGAATCTAACAAACGTCAGAGGACCTACTAAGCAG
Seq A exon
GTGAGTACCAGTCGGAATGGCTGCTTAAGCTGAAGTTCAACTATTTGAAATAGTTGGAAGCAAAGCGTTTTGTAGTTGTCATGATAAATGTTAAATTTCAAGTTAGTTGATAGCTTGAAATAGATTTAACTTACAGGGTATGTGTGTGGGGGTGTGTGTGTGTGTATGTGTATGGGTGTGTATATGCTTATATACACACTTTTAGTAAAGAAATCTTTATTTTTTCTAATGTTTCTATAAATACAAAACAATTAACAATCATCTGGATGTTCGTAGAAACATTCACTTTATGTACATAAAAGTATCAGATCTAACTGAAAGAGTATTGAAAAAATAAATGTTGTCATTGAGACCAGCTTGTATGTGTCTTTCTTTCATTACAAACACATGCCCTGAGCGTGGTGTTGGATAAGGATATGGAGTTTGCCCCTGGAAAGGACAGGTGAAGGAAGGGGTAAACGAAATGGCCATGGGAGTTCTGTTAAGTGAAACCGAAAAAGCTGCAGTAATTTGGGTAATCTGGACTCTCGAATATCAGATGTAGCTGAAATGTGTGATGGTGAAGAAGATACTGCAGAATGTGTGGTGAGGTGTAAGTTGAAAATGCTAAGTATTTTAGTTAATGACATGGCCAATAAAAAGTGGCAGAGCTCTTACATGGAGGTTTTACAGACTTGAGGAACCAAAACTCACTTGCTCTTATGAAACATTCTTTTGATTCAAATTTATATATAAACTTTTTTAAATATTCAGGCCATTAAGAGCATGGTTCCAAATAATTTCAGTAGGCAGATTTCTACTGCTGGGGAGGAAGAAACAACACCACAGTTGTTTCTTTCTTTCTTTCCCTTCCTTTCTCATTCTAACAATATTTCCAGTCATAACCCTTTTCACATCAGTATTTTACATAGAAGTTTCACACCTTGTCATTTCAACATGTGGGTGTTTTCCATGACCTGGGAGTTACAAAGGTCAAGAAAGACTTTACCTGCATGGTTCTCCCTCTTTTCCTAGGGACCTCTATGTTTCTCTTTTAATAAGCAGTGGTTTCTAAAGGTCTTAATATTGTTTATGTACAACTTAAAAAGAAAAAAAGCCAAATCTGTCTGCGTGGAATTGGAGCTAAAACTCTTCTGAAAGTTAAAAATTGTCAAGTCCAGTGAATGTAACTCTTGCCTGTGGTTTTTATCTTTATTTACAAAATGTTTTTTCTTAAATGTGATTATTTTTTTTAACTCCTAATAATATAAGGCCAAACCTTCCTATCACTACAGGGGAAGCTGTGATTTGAAGCGTAATGTAATATCAATTCTGTCTTGATTGCAAGAAAACTACTTTTTACCATAAAAGTATAGATACGATAAACATCCCAAGTTAGTAATAAACCTCAGAAAATGTTAATTCATCTAAAAAATATGATCATAGGCTGCAGGTGTGTCCTGAGTGAAGATGATACTGCCTATTACTTGTAGGATTTGCTTTGTGGAAAGTAGTGACTGAAAGTGATTTAGTGTTTCCAGGTAAACTGCTTGCTATGCTAAGAAGTTAAGAGAAAATTTTTAGTGAGAAATTCCTGGCTGTAGTAGGAGGGAATATTAGTGTTAGAGCAACTATTACTGTTCATGTTGTAAAGGTTATCTAACTGCTTGAATGATAAGAAAACAGACCACAAACTATTTATAGTCTAAAACCTGATATTAGAAGGACCAGGTCTGAAGGCATGGCCCAATCTTAATCTCTGAATATGCTGAAGTAAGCAAAGAGAAGAGGTGGTGTGTGGTTTTTAATTACTTTTTATTTTAGTGATAATATATAGCATCCTGTGGCAGGAAGCTGATGCCGGATGTATTCACCTGCTGTAGGGAGCCTGCTTTGGCAGGTGGGTTGGACTTGATGATCTTTGGAGGTCCCTTCCAAGTCCTACAACTCTGTGATTCTATATTCACAAGGTAGAAATAAAGACCTGGCTCTTTCTGAGGGTAATTAACTGTCAGATGACTTTATATAGGAAAAATCATGCATTTTGCAAAGCACAGATAATTTAGGACTACTGTGACTACTGTGTCTTGATTCCAGGCTAATGCTATTTATTTTTGTGGTTTGGGATATTTAAAAACTGAAACTGAATGCATGATGGTGCTTTCTGCTTTCAAATGTCAGTGAACTTGGTTTGTGTTTTACACTGTACTACAATACAAAGAGCGGTTGGGAGCCTATCATAGATGCCATGGGAAAAAAAGCGAGTTCAGGGTGGAGAGCTTTGGTTATCGCTCCAAGACAGTGGACTTTCATTGGCTGCAGAAGTTACTTTGTCCACTGTATTCATGGTGGGGAGAGGAAATCAAATTATTAGCTCTACTCTCCTGTTTTTTTTTGTTATTTAGGCAAAATTGACACCGTACGTAATTTTTCAAGCATTTTTTATCAGCAGTATACTGGAGAAAAAGTGCTGACTTTCACTCACTGCTCAGAATGAGGCGCTTTTTTTAAAAGAAGGACATATGTATGATACTTAATGTTATTCTTCTGAATGTGTTAAAAGCCTTTATTACTTATGCTGCTGTAAAGCAAATAGGTACGTTGCTTTTTGATACTATTTTTGTACTTGTGTTTTTTCTACAG
Seq C2 exon
AACTAAATAATGACATGACCCTCGACTGACTGACTGACTGAAACGTGACTAGACATGGTTCCTGGGGACAGTGACATCTTTCTTTTCTTTTTTCTCTTTCTTTTACATTGTTGCTCTGTTGATATCGTGCTTTCTGTTTTTAAGAAGTGTAGACATGCAGTTTTAAAAGAATCTAGCAATTTTAAAATTGTATACTGATGGTTGTTCATGTAGAGTCCTGTTATCTTGTATTCCAGAAATAAATCTCTTGTGCTAAACACGGTTCCACAGACGTGGAAATTGCAGTGATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009202:ENSGALT00000014983:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.234 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF138931=RRM_5=PD(92.5=75.4)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]