BtaINT0123479 @ bosTau6
Intron Retention
Gene
ENSBTAG00000044062 | RBMS3
Description
RNA binding motif, single stranded interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:13427]
Coordinates
chr22:4667485-4670463:+
Coord C1 exon
chr22:4667485-4667565
Coord A exon
chr22:4667566-4670335
Coord C2 exon
chr22:4670336-4670463
Length
2770 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
TGTCCTTGTTGTCTCCACAGGGT
3' ss Score
12.4
Exon sequences
Seq C1 exon
TACATGACTGCCGCGGCTCCTATGCAAGGGACCTACATCCCCCAGTACACGCCTGTGCCTCCGACAGCTGTTTCCATTGAA
Seq A exon
GTAAGTCCGTCTCTTCTTACAGAACGAGGTTAGGAAGATAAATCTCAGCCTCGAGCACCAGGGCCCACTGTAAACCCCCCAAATCCTTAGTGGTGATTGTTGTGCTACTTGAAAGTTTGCAGTTGCAAGCTCATTCTGTCAAAGTATGGACTTTACTTGAACACGCCTTTGCCTTGCTTTGCACAGGACACGAGCAAATTTGGTATCCAGGTCTCAGAGGAACACCACTATTTTTTTAAATGTTTTATTTTATTTTTTAACTTTACAATATTGTATTGGTTTTGCCATATATCAACATGAATCCGCCACAGGTATGCTTAGAGAAAAGACCAAAGATCAAATAACTACTCCATCAAATGTGAGCCACAAACAATCAGAAAGAGGAAGGGAAACATTTGAAGCCTTTTGAATAAGCCCGTTCTCCGATGCCCTGTTACTCCAACGGTACTCCCTAAACCAACATGAGCAGCACCACTTGAGAGCCTGTTAGAAATACAAACTTTCAGACTCTACCTGGACCTACTGAATTAGAATTTGCATTTTCACAAGAGCCCGTAAGGATCAAGGCGCACATTAAAAATTAAGAAGGACTGGATTAGAGCAGTGGTTCTCAAATTTTTCTGCATGTTGAAATTACTTCAAGATTTTTTTTTTAAATAGTGATTTTTGCCAGAGTCTGATGTGGTCCAGGCTGTGGACTGCACCTGAGAATTTTTAAAGGATGCCAGGTGATTCTTTTGTGTACTAAAGACGAAGGACCCCTGCTCTCACCAGTGAACCTTGATGGGACTGTGGCGTCCTACAGACAAAGGAGGAGAACGTACCACTCTGGTTGGTGCAGACCATGAGTGATAAAGTCATGCTGGCCTTGCTGGGAGCTTTCTCCTCTCCTCTCTCTCCATTGGGCTAAATCCATTTCCTCTCTACACTGTTTTACTGGACAGAGCCAGAAAGATACTGGATAGGAGGGGCATAGAGCTATGAGGACTATGATGAGAACTCAGAGGTATAGACTTCTCCCTGCTCCCAGCCCTCCTTCACCTTCTCCTGATGCCCATTTGCTGTTATGGTCACAGTGGATGTCTTCCATCAGCTGGGACTCCTCTGGAGTCCAGCTGTTGCTGCTCCTCACGTCAGTACCACTCAATGTGGGAGACTAGCATGACTCTTCCAACCTCTGGAGCCACACAGATTAGGTGAAATTTTGAGAGATGAAATTGGATCTTTTCAAAATATATGTTTGTTTGCTTGTTTTTGGTGTGTTACCGATGTTTGCTAGTACCAAGATTTGGGAAGCACAGACATTTAAGAGGACAGTACTGTGTCATTTAGGAAACCAAGGAAGAAAAACGTGTTAATCTTTTATGTGTTCCAGACCTATAAGCCCTTGAGAATGTTTCACTATTAAAGAGGTTTTAATTAGCTTTTCAGATTTTTGAGAGTATGTGATTAAAATATATGTTCTTTGCTAGATTTAGCTATCAAAACCCATCTAAGCCATGAGAAAAAATTATGAACCTAGACATCATAGGTGGCCTTAAGCATCGATGTCTGCCACATATCTGCATCTCTCTATCTGTACACCAAATGTGGGTGCTTATCTACAGAATTTGAGGTTTTTGCTGACTCTAAAACAAGGAGACACACTTAAGAGTATTGCTTATTGGAAACAGTCTAATATATCAATAAATCTGAGATTTAAAAAGAAGTATACCACTAAGAATTATATAAGCATACCCTGATATATTGCCTTGAGTTGTGCTTATAAAGGAAAGCACTGATTCATTTTCTGTGTCAAAACAGTCATTGAAAATTCACCAGTATTCATACAAGTCAATGCAGGTAGGAAACTCAGAAAACTGTGTAATACCATACAGTAGATTAGGGGTGAAAAAATATTGAATTCATAAAGGGAGAATTTTCACATTTTGAGGAGCAATTTCAGGGAACTTCTGTTAAGGACAGAACATTGATCAAAAGCCTGTATCTCTGCAGAAGTCCAAGGCTATAATATAAGTACAACCAGGAGAATGTAGTCATATGGATTCTCTCCCTAGGTTGACTAACTACCAAACCTTTCTCAGAACCAAACATAACTTCTGAGTGAGGATCAACTCAAGAAATCTATTCTTGTTGGCATCTGTGAGAAACGGAAGCCATCAAAAGGCTAAAGGAAGGAGCAAATCAAAATTAAGGATGTTAGTTTCTTTTTCTGAAACCTCTAAATGAATCCCAGTTCATGTCGAGAAAAATAAAAGTAAATAAGACAAATCAAATTCCTTAAGGGAAAGCGTATTTGACAATGTCCTTTTAGGAAGAATCCAAACCTGGATATAGATTTTTATTAGTAGTAAGGTCCATTGTTTTGCCAGATTGTAGAGACAGGGTAGAGAAATTTATTCCCAGGAAAATGCTCAAACGTATAAGTTTTTATAGGAATTCTGCATGCTCTTTTTTAATTAAGGAATTATTATTTAGTGTGGCTACAGGCAGCTGCAGTTTAAAAGTTCTACCTGCAGGCAAAATGATTTCCTGATCATTTGACTGCTATAGGGTCTTCTGATGGCAAATCTTCTTGGTGACACATGGAGGTAAATTCCTCAGATGAGTTCTGTGGCTTTTCTGCTAGTGTTTATTGTGGCTTTATGTAGCCGAGTGCAACTCCACACAAGCCCAGTGCCAGACAGCACGGGGACGTGCCCTACAGTCCGTCCGCAAGGAGCCCTTCTGCTCAAGCCAGTGAGGTCCTATGTCCTTGTTGTCTCCACAG
Seq C2 exon
GGTGTTGTGGCTGATACCTCTCCCCAGACAGTGGCACCTTCGTCCCAGGACACGAGTGGTCAGCAGCAGCAGATAGCAGTGGACACAGCCAGCGAGCATGCATCTGCGTATTCCTACCAACAGTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044062:ENSBTAT00000061510:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]