DreINT0125516 @ danRer10
Intron Retention
Gene
ENSDARG00000044574 | rbms3
Description
RNA binding motif, single stranded interacting protein [Source:ZFIN;Acc:ZDB-GENE-060929-244]
Coordinates
chr16:39696293-39696947:-
Coord C1 exon
chr16:39696864-39696947
Coord A exon
chr16:39696421-39696863
Coord C2 exon
chr16:39696293-39696420
Length
443 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CAGACATCATGTTGTTGCAGGGA
3' ss Score
5.11
Exon sequences
Seq C1 exon
TACATGACTGCGGCTGCTGCTCCTATGCAGGGGACCTATATTCCCCAGTACACTGCGGTGCCTGCCTCTGCTGTCTCAGTGGAG
Seq A exon
GTGAGTTTCTGGGTGACTGCAAATCCATTCACTGCTCCAGCTGATTAGACCAGCTCTGCTAATTGAAAACGTAGAGATCACTTGCCTCGGGGCACAAAATCCACCCACAACTTCCTTAGTGCCTTTTTTATTCACAGCTTTACGAGGTCTGGAGCTCAATCTGGCCCAAGAGCTAAACGCAGCTCTTTTTGGTTGAGGTTAAATAGTATTTCAGTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTAGGACGTCCTGTAATTCAGACATCATGTTGTTGCAG
Seq C2 exon
GGAGTGGTGACGGATGCTTCTCCACAGAGCGTTCCAGCCTCGTCACAGGACGCCAGCGGGCAGCAACAGGCTCTGGGTGTGGAAAACACCAGCGATCACGCGCCCACCTACTCTTTTCAGCCCGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044574:ENSDART00000138388:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.977
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACATGACTGCGGCTGCTG
R:
GGCTGAAAAGAGTAGGTGGGC
Band lengths:
206-649
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]