MmuINT0132959 @ mm10
Intron Retention
Gene
ENSMUSG00000039607 | Rbms3
Description
RNA binding motif, single stranded interacting protein [Source:MGI Symbol;Acc:MGI:2444477]
Coordinates
chr9:116582738-116586095:-
Coord C1 exon
chr9:116586018-116586095
Coord A exon
chr9:116582866-116586017
Coord C2 exon
chr9:116582738-116582865
Length
3152 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
GTACCGATTTGCCTCTTTAGGGT
3' ss Score
9.16
Exon sequences
Seq C1 exon
TATATGACTGCTGCTCCTATGCAAGGGACCTACATTCCCCAGTACACGCCTGTGCCTCCGACAGCTGTTTCTATTGAA
Seq A exon
GTAAGTCTATCCCATAAACGCAAAGAGGCTAGGAAAGAAGAGAAGTATCAGTCACACAAGTCCCCATGATCCAAGAAATCCTCAGATAAAGTCTTTGTGCTCTTCTAAAACGTATCCCTGTAAGCTGAGTATATAGAAGTCTATACAATGGCTCAATCAAACCTACATTTTGCTTTGCACATGTGGCTAACAAATCTTATAGAGAGGTATAAAGGAAAAGTAATTTGCATGCCTAGACAACAGTTTAATGAATAAACCTTTTTCACCTTAAATGCAGACCACACTCATGGGCAGAGGGGATGAACCGGTTCTAACTTGGTTCTTTTTCTTGTTGCTGAGCTATATAACAAAAGCAACTCGAGGCAGAATGGGTCCATGCTGGCTCACAGTTCAAGAGTAGCATCCATAATATGCTGGGGAAGTCATGGAGACTGCTTACGCAGCTGCTCATATCACATGCACACTCAGGAAGCAGAGACCAATGAATGCTTGCTGCCGTTCAGTTTCCCTTTCTCCATTTGCACAGCCCAGGGTCCCACCCAGGGAATGACACCACCTACAGTTGATCTTCCCACCTTATTAATGCAATGAAGATAACCCCCACACAAGTGTATCCTGGGTTGATCTCCCAAGTCTGATGGGTCAAGTTAAGAACCAAAATTAACCATCCCAACATCACTTAGGAGTTTGTTAAAAAGGAAATGTATCAGGTACCACCACTCTGTTTCCTGGATCTGTCTGTTAGTTTTAAGATGGTTGCTTGAGAATCCAGTCTCATGGACTGAGTCAGCACCTTGATGCTCAACCCCTTATGCTAATTAAGACTATTAAAGGGAGTGGTTATGGATTCCTGAATTTGGTTACAAGAGATTCTTACTGATTTGTCTGGAATATGTTCTAGGTGTAGGGATATTTAAACAATCCCAGAAGATGCCAGCAGGTATTAAGAACTGAGACGTGTTGCTCTGTTTGCAAGTGTTCTTACTGTGTATGAGACTACAGGATCCATCCTTAGCACACTAGAAAGCAAACTAGCAAAAGCCCACTGTTCTAATGAATGAATTCAGCACACTCTAGCTTTCCTAGAGACAGGAAAGATGTCATTGAATCACGGTAGTTTTCATGAATCATGCTGTCATCTTGTCCTTGCTGGAAGTAAAGCACTTTCTCTCTTTCATTGGGACAAATCAGTCCCCGACAACTCTCATTTTACTGGATGGAGCAGGAAAGGTACAGAGGAAAGCAGAGAGCCACATAGATGGTGGCAGGTACCTAGACTGTATCTACCTCTAGTCATAGTCACGGTCCCTCGTCTCCTAACGCCCAAGTGCTTTGTGGTCATTGGTGGACATTACTTCCCATCCGCTGGAAACTGAAAAACTAATCATTATACTTCCTCAACTCCATCTTTTCTGCTCTGTAACACAGCCAGTAACTAGAGTGCTGTACTTCTCCATGGGAAAATTCACCAGTAGGGAGGTCGACGGAGGTCTTTGCCGAATAAATTGGATCTCTGAAAATGTTTACAGATTTATTTTTGGAGTGTAACAGATGTATACTTGAAGACAGGTAAAGAAAGCCCCAAAGATTAACAAGGCATTGTTGCAGTCTAGGATACTAGGCCTATCACATTCTTATTGTTTTGACCTTTCTAGATGTGTAGTTATGGCCTATTAAGCAAGTTCTAATTAGAGTCCAAGAACAAGAGCTTAGATTACACAGTATTTGCTATATTTAGTGACTTAATAGCCAACACATTACAGGTGTCATGAGCATAAACCTCTCACATATTAGCCTTTCTATGTGTCTCCACCAAAGGCTTATGTGACTGAGAAAGCAAGAGCCTTTCATTGACATGGAGGAACAGACACATGTAAGAAAGTGGCTTTCTAGAACTAGATCTGGAGTTGGGGAGAGAAGACTATAGTCTGCCTTAAAGCCTTGCTTGTGAAGAAAAAGAACTTTGTCATGTTCATGTAAAAATACCAGATGGACATTTGTTGGTATCCATCCATCAATCAATGGACCATTCACAAACTAATCCTATTTGGAGGCTCTAAAAAGAGAAACCCTCCCTCAAACAAAACGTACAAAACCAGGAAGTAAGTGATAGGAACAACTGAACATAATCTATATTATCTATCACCTATGTCACCCACATCACCCATGCCACCCACTTCACCTGCATAACCCACGGCAAGTACTCAAGATTAAACCAGCTTGAAGATGCTGTGGCTTTGGGTTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTACCTCCCCCTTCTCATGCCCTCTTCCTCTTCTTTTATTTTTCTGAATCCTCCGACTGAATGCCTGTTCATATCTTAGAAAACAAACCACAATAAAACAAGAAAGAGAGGGAGGGAGGGAGTGAGGGAGGGAGGGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGCAGGCAGGCTACATAAGAACCTATGCCATTTAGCCCAAATGGCACAGCCTTTGATCCCAGGACTCTAGAAGTAGAGACATGATTTCCAAGGGTTACACAAGGAAACACTATCTAAAACAAAACACAAACAATACCAACAGCAACAAAAAAATCTTATGCAAGAAGCTAGAGGGAACATTTCTTCTACTCTCATAATATAGAAAGTTGGTTCTCAGCCCCCAAGTTGGGAGGCTCAGGGACATCTGCAACTCCAATTCTAAAGGAAGCAATGCCTTCTCCTGACTTCATGGTCACCCTCACACGAATGGGCATATATGCTCATAGACATATGCACATCTGTACATAACTAAATCTTCAAAAACATGCTTAGATTATTGTAGGAATGCCCGACTGTGATTATAGACGGCTTTAATTGAGGACAGAGTCTTTTTGCAAATACGCTTGAAATGGTTTTCTGACCACATGACCCTTCCGAGGACTTCTGAGGGCAGAGCTTACTGTTGTTTCATCATCAATACAAGATCAACCATCACGCAAGAGTACCCTGATGTTTTGCTTTGCGCCCATGCTGTGGCCGAGGGTTATCTCTTTTCAAACCCAACAGAAGCAGGGCATTTGTGCTGCATCTAGAGAGGGCCCTTTGCCGAAACAAATAAGGGCTGTGTGTACCGATTTGCCTCTTTAG
Seq C2 exon
GGTGTTGTTGCTGATACCTCTCCCCAGACGGTGGCCCCCTCATCCCAGGACAGCAGTGGTCAGCAGCAACAGTTAGCAGTGGACACACCCAGTGAACACGCACCGGCATACTCCTTCCAACAGTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039607:ENSMUST00000111773:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.169 A=NA C2=0.998
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types