GgaINT0092988 @ galGal4
Intron Retention
Description
NA
Coordinates
chr2:40176792-40179470:+
Coord C1 exon
chr2:40176792-40176872
Coord A exon
chr2:40176873-40179342
Coord C2 exon
chr2:40179343-40179470
Length
2470 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
GTTCTTATTTGACTCCTTAGGGT
3' ss Score
8.44
Exon sequences
Seq C1 exon
TACATGACTGCTGCTGCACCTATGCAAGGGACCTACATTCCCCAGTACACTCCTGTGCCTCCAACAGCTGTCCCTATTGAA
Seq A exon
GTAAGTTTACCTCCATCCATGAAAGTAGAGTAAAGGGGTAACAGAATTCTTACACCTATGATGCCTCATTGTACCTGCTGTTTGAGAGGGGCCTAAAATCATCTTAAGGAATGGTACATCTTCCAGCTTTTTTAAAATTAAGATTTCACATTCCTTTTCTTTACTTATTTTCCCTTTTAGTTTACTTATTATTATTTGCAAGGGCTCTTGTCTTGCGTTTGTTTTGCTGTACAGCAGGACATGGAATAAAACATCAGTGATTATGACTGTCTTTTTCCCCATGTACTTGGGAGGGGAGATGGGAAGCGACAGGAAAACAATCCCAGCAGGCAGACCACAAATGCAGAAGAGATTCCAAGAAAAGAAGATTGCAGGAGGGTTTGATGTGGTCCTTAACAAGTATAGGTAATTGCTAAAATATTTAGCCAACAGAAAAAGTGATTGAGCAATGGAAACCTTCCTCTTGTATATACAGACGTGGAGGTTGCTGCACTGACTGAGTGCTTTTTCATCCTTGAGGAAGGATTCGCTCCCTCCCTCCTTGGGGCTGAGTCATGCTGATGACAGTCTAATGAGTAAGTATTTACTCAACCCTGTAGACCACAAGCTGCTGGGAGAGTCAGCTCGGCCTCCACTTCTGTGCAGTATTATAAGGGCCACCAAGCACAGTGAGAGGAGGGTGCCTTGTTATCCTCTTCAATGTGTGCTTCTCTTTGGTGCTACTCCTTTTTATTTATAGCTTCTTCCATTCTGTAGGGTAATATGAGGTGTTCCAGGGTCTCCATACTTCTGTCTTCAGCTGTATGGACTTTTTTGACACCAAAAAAGTCCATACACACACCTGCTTTGTGCTTCGAAGTTTCTGTGTTAGTGATGCTTTTGACGTGGCTCCACCAGCAGTCAGGTGGACTCATCTTGTTTTTTTTTCCCAGTTCTCTGCAATCAATGAAATTTCTAAATGAGAGCCCTCAGAAAAGGCTTCTACTTTTTTGTCACACTTTGCCAGTCAAATCTTCAGTCTTTTTTCTTGCTTGAAGATAATACTCCCCTAAGCCTTGTTTGGTTGCAAATGGGGCATGAGTGCCTCTTTTTAGTAGCTATTCTTAGATATTAAATGAGGCAGGTACAAATCCAAATCAAAAGGAGATAGTGGGGTGGAAACAAGAGTGGCTCATCCATCAGTACTGACCAGTGCTAATAAGAAATTAATTCTTCCTGAGCTCTTCTCACCATCACCCATTTTTATATTCATGCCCAATGAAGCAACATGATATAGTAATCAAATATTATCTAAATATATAACCAGTCTTGAACTGATCTAGTGATGTTCATTATTGCTGTTGTTAATTTGTGTATGGTCTCTGCCCCAGAGAGCTTACATTCTCAAAATGGACAATAGCAGAATCGTAAGACAAGGAAGTGCACAGAAATAAGATAATACAGTCTCAACAGACATGAAGAGAAATTCTGAGAAATGGAGAAATGAAACTTATACTTTTTCACAGATAATATGAAATAAACTACCTCTTGTTTACATAGGAATCAAATGAAAACAAATCAAGTGGTTTGTGCTCCCTCTTCTGGCTCTGTTGTATGTGATACGGTAATAAAGCTTGTTCCCTGAAGAGATCTGATAGTGGTATTTTTGTGTCCAACACATCAAATGTGAGAGTAAAGGCAAGAAAATATAGATTGCTTTGAAAGCATGCAGAATTATTAGGAATTAATATTATTCAGACTGTCCAAATACGTTAAGAAATAGAACGTAATGTTAAATCCATGCACATCAACTTTTGTGTGTCTAATCACTTTGATCACTTTTTTTTTTTTTTTTCCAAATTTACAATTGAAACAAAACTTTATTGGAGCTTTGACTTAACTAGCTAAATCTTCAGAGTGGGGTAAATTTATCCTTGAAAGAGAACATGCATAAATGCACTGTGTACAGGAGTGCATTGTTTTTCTAAGGCAGCTAGAATTCCATTGGACATGTAATAGATTAGAGGGTGGTGGACCTAATTTCTGCCTTTATCACATCGCAATTCAAGGGAAATGACAGTGATTTCACTGTGAAGTTGGGCTAAGTACATGAATGCCAGAGAGCCATTCATTCATTATAAGAAAGACAAAAAGTAAAATCCACATTTCACTGAAGTCAGCAGAATTTTTGTCTTTGGCTTTAAATAGACAGAGAAATGTTCCAGAATGCATAGGTGTTTTCCAGTTCAGCTTGTGAGAGCGAAGTACTGGAGAGGTCGGTACACTAAGGAAGATTCTCGTTGCTGGATTATCTCTTTGTGAACTAATTGAGTTTATTGTGTTAGCATATGGTTCTGCTTTCCCAAACTCTTTTAACCATACAGTACTCCAAGAGAAATACAGGAATGCTGATCTGGTACTGAGTTCCTTTATGTAATTAACTGAAGTGAGTAAAAACAGTAACCTTTTGTGTTCTTATTTGACTCCTTAG
Seq C2 exon
GGTGTTGTTGCTGATACTTCTCCACAGACAGTAGCATCTTCATCACAGGAAGCCAGTGGTCAACAGCAACAGATGACAGTGGAAACATCCAGTGAACATGCACCTGCATATTCTTACCAACAATCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011439:ENSGALT00000037692:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]