RnoINT0125334 @ rn6
Intron Retention
Gene
ENSRNOG00000025881 | Rbms3
Description
RNA binding motif, single stranded interacting protein 3 [Source:RGD Symbol;Acc:1588240]
Coordinates
chr8:124840160-124844312:-
Coord C1 exon
chr8:124844235-124844312
Coord A exon
chr8:124840289-124844234
Coord C2 exon
chr8:124840160-124840288
Length
3946 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
GTACCGATTTGCTTCTTTAGGGT
3' ss Score
9.02
Exon sequences
Seq C1 exon
TATATGACCGCTGCTCCCATGCAAGGGACCTACATTCCCCAGTACACGCCTGTGCCTCCGACAGCTGTTTCTATTGAA
Seq A exon
GTAAGTCTATCCCATAAGCACAAAGAGGCTAGGAGAGAGAAGTCTCAGCCACACAAGTCCCCCTGATCCGAGGAACGCTCAGATAAAATCTTTATGCTCTTCTAAAACCTGTCCCTGTAAGCTAAGTATATACAAGTCTATACATTGACTCATACATTGCTTTACACATGCAGCTAACAAGTCTTATAGAGAGGTATAAAGGGGTTGGGAATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCACAAGGCCCTGGGTTCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAAAAAAGAAATAAAGGTATAAAGGAAGAGTGATTTGCATGCCTAGACAACAATTCAAATCGGTTTCACATCAGATGCAGACCACACTCGTGATCAGAGATAAAGAACAGGTTCTGGCTTAGTTCTTTTCCCTGTTGCTGGGCTATATAACAAAAGCAACTCAGGACAGAATGGGTTCATGCCAGCTCACAGGTCAAGAGCCCCATCCATCCCATGCTCGGGAAGTCATCGAGACTGCTCACGCAGCTGCTCATGTACATGCACAGCCAGAAAGCAGAGAGCACTGAATGCACGCTGCCATTCAGTTTCCCTTTCTCTGTTTGTACAGTGCAGGGTCCCAGCCAGGGAATGGCACCACCTACAATGGGTCTTCCCACCTTATTAACACAAATGAAGATAACCCCACACAAGGGTTTCCTGGGTTGATCTCCCAATCCAATCTGTCAAGCTAAGAACCAAAATTAACCATCCCAGCATCACTTAGGAGTTTGTTAGAAAGGGAACGTATCTGATACCACCACTCTGTTTCCTGAATCTATCTGTTAATTTTGAGATGGTTCCCTGAGAATCCAATCTCATGAAATGAGACAGCACCTTGATGCTTAAACCCTATGCTAATTAAGATCGTTAAAGGGGGTGGTTGTGCTTTTAAAAATATGGATTCCTGAATCTGGTTACAAGAGATTCTTACTGATTGGTCTGGAATATGTACTGGGCGTAGGGATATTTAAACAGTCCCAGAAGATGCCAGTGGGTATTAAGAACTGAGAGCTCTTGCTCCAGTTGCCAGGGTACTCACTGAGTATAAGGCTCTGGACGCCACCCCTGGCATGCTAGAAGGCAAATTAGCAAAAAGACCACTGTTCGAATGAATGAATTCAACATAATCTAGCTTTCCTAGAGATGGGAAAGATGTAATTGAATCACTGTGGGTATCCTGAATCATGCTGTTTGCCATCTTGTCCTTAACGGAAGGAAAGCACCTTCCCTCTTTTCATTGGGACAAATCCATCCCAGCTGCCCTCATTTTCCAGGATGGAGCTGTAAAGGTTCAGAGGAAAGCAGAGAGCCACAAAGATGGTAGTTGGTGGTTAGACTGTATCCACCTCTGGTTAAAACCATGGCCGCTCTTCTTCTAATGCCCAAACACTTTGTGGTCATCGGTGGGCATTCGGAAAAACTAATCAATACACCTCCTCCCAGACTCGATCTTCCCTTCTCTGTAACACAACCAGTAACTGGAGTTCTGTACTTCTCCATGTGAAAATTCACCAGTAGGGAGGTCGACGGAGGTCTTCGCCGAATAAATTGGATCTCTGAAAATGTTTACAGATTTATTTTTGGAATGTAACAGATGCATGCTTGAAGGCAGGTAAAGAAAGCCCCAAAGATTGACAAGGCATTGCTGTCCAGTTTATGAGGCTAGGGCTGTCACATCCCTTATTGTTTTTAACTTTCGAGATGTGCGGGTCCAAAGTCACGGCCCATTAAGCAGGTTTTAATTGGAGTTCAAGAACATGGGCTTAGATTACATGGTATTTGATACATTTAGTGACTTAAAAACCAACACATTACAAGTACCAGGAGCATAAACACCTGTCACGTATTCGCACTTGTATATACGCCACCAAAGGCTTGTGCTACTGAGAGTCAGAGCCTTTAGTTGGCACAAAGCAACAGACACAGGTAGTTTGGTTGACTTAGATCTGGAGTTGGAGAGAGAAGACTAACTATTCTCACCATTCTGCCTTGAAGCCAGGCTTGTGAAGATCAGGAACGTAGTCATGTTCACGTAAAAACACCAGAAGGACATCTGTTGTTATCCATCAGTCCATCAATGGACCAATCACAAACCAACCCTATTTTGGGGGTTCTAAAAAGAGAAACCCCATTTCCAGAAAAAAAGTACAGAACCAGGAAGTAAGTGATGGGAATAACTGAACATAATCTACACCATCTATGTCACCCACATCACCCACATCATCGCCCACATCATCACCCACATCACCGACATCATCACCCACATCACTGACATCATCACTGACATCATCACCCACATCACTGACATCATCACCCACATCACTGACATCATCACTGACATCATCACCCACATTACTGACATCATCACTGACATCATCACCCACATCACTGACATCATCACCCACATCACTGACATCATCACCCACATCACTGACATCATCACCCACATCACTGACATCATCACTGACATCATCACCCACATCACCCACATCACTGACATTATCAGCCACATCAACCACATCATCACTCACATCACTGACATCATCACTCACATCACTGACATCATCACCCACATCATCACCCACATCACCCACATCATCACCCACATCACCCACATCACTGACATTATCAGCCACATCAACCACATCATCACTCACATCACTGACATCATCACTCACATCACCCACATCATCACCCACATCATCACCCACATCATCACCCACATCATCACCCACATCATCACCCACATCACTCACATCACTGACATCATCACTGACATCATCACCCACATCATCACCCACATCACCCGCATCATCTGCATAATCCAGGACAAGGATCCAAAATTACCCCAACTTGAAGCTGCCATAGCTGCTGATTCCTCCTCCTCCTCCTCCTTCTCCTCCCTCTCCTCTTCCTCCTTCTCCTCCTCCTCCTTCTCCTCCTTCTCCTTCACTTCCCCCTCCCCCTCCTCTTCCTTTTCCTCTTCTTTCTCTTCCTCCCCCTTCTCCTCATCCCCTCTTCCTCCTCTTTTATTTCTCTGAAGCCTCTGGCTTAATGCCTGTCTGTGTCTTAGAAAGCAAACCACAATAAAACAAGGAAGGAAGGAAAGAAGGAAGGAGGGAGGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAACCAACACAAGAACCTGGGCCAGATGGCAAATGCCATTGATCCCAGGGCTCTAGAAGCAGAGACATGAATTCCAAGTCAGCATGGTTTAGGTAGTAAACTCCAGGCCAGCCAGGGCTGCACAAGGAAACACTATTAAAATAAAACAGAAACAATACCATCAGCAACACAGATCTTATGCAAGAAACTAGAGGGAGCACGTCTTCCACTTTCCTAACACAGAAAGTTGGTTCTCAGCCCCCAAGCCCGGAGGTTCAGGAACAATGGCAGCTCCAATTCCAAGGGATGTAACACCTTCTTCCGCCTGCCAAGCTTGCTCACACACACGTGGGCATATATGCACTAGACATCTACACATCTGTACATAAATAAGAATGTATAATAGATCTTCAGAAACATGCTTAGGTTATTGTAGGAGAGGCCGGACTGTGATTATAGACAGCTTTAATTGAGGGCGGACTCCTCTGTCGCAAATACGGTTGAAATGGTTTTCTGACCATACGACCTTTCCGAGGACGTCCGCTGACCCAGCTTACTGGTGTTTCATCATCAATACAACAAGATCAACCATTCCACACGCATGCCCTGATGTTTCACTTTGCGCCGGTGCCGTGCTTTCCTGTGGCCGAGGGTTATCTCTTCAAACCCAACAGAAGGGCATTTGTGCTGCATCTAGAAAGGGCCCTTGGCTGAAACAAATAAGGCCTGTGTGTACCGATTTGCTTCTTTAG
Seq C2 exon
GGTGTTGTTGCTGATACCTCTCCCCAGACGGTGGCCCCCTCATCCCAGGACAGCAGTGGTCAGCAGCAACAGTTAGCAGTGGACACACCCAGTGAACACGCGCCGGCATATTCATTCCAACAGTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025881:ENSRNOT00000036642:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.168 A=NA C2=0.984
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]