GgaINT0092988 @ galGal3
Intron Retention
Gene
ENSGALG00000011439 | RBMS3
Description
NA
Coordinates
chr2:39597696-39600375:+
Coord C1 exon
chr2:39597696-39597776
Coord A exon
chr2:39597777-39600246
Coord C2 exon
chr2:39600247-39600375
Length
2470 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
GTTCTTATTTGACTCCTTAGGGT
3' ss Score
8.44
Exon sequences
Seq C1 exon
TACATGACTGCTGCTGCACCTATGCAAGGGACCTACATTCCCCAGTACACTCCTGTGCCTCCAACAGCTGTCCCTATTGAA
Seq A exon
GTAAGTTTACCTCCATCCATGAAAGTAGAGTAAAGGGGTAACAGAATTCTTACACCTATGATGCCTCATTGTACCTGCTGTTTGAGAGGGGCCTAAAATCATCTTAAGGAATGGTACATCTTCCAGCTTTTTTAAAATTAAGATTTCACATTCCTTTTCTTTACTTATTTTCCCTTTTAGTTTACTTATTATTATTTGCAAGGGCTCTTGTCTTGCGTTTGTTTTGCTGTACAGCAGGACATGGAATAAAACATCAGTGATTATGACTGTCTTTTTCCCCATGTACTTGGGAGGGGAGATGGGAAGCGACAGGAAAACAATCCCAGCAGGCAGACCACAAATGCAGAAGAGATTCCAAGAAAAGAAGATTGCAGGAGGGTTTGATGTGGTCCTTAACAAGTATAGGTAATTGCTAAAATATTTAGCCAACAGAAAAAGTGATTGAGCAATGGAAACCTTCCTCTTGTATATACAGACGTGGAGGTTGCTGCACTGACTGAGTGCTTTTTCATCCTTGAGGAAGGATTCGCTCCCTCCCTCCTTGGGGCTGAGTCATGCTGATGACAGTCTAATGAGTAAGTATTTACTCAACCCTGTAGACCACAAGCTGCTGGGAGAGTCAGCTCGGCCTCCACTTCTGTGCAGTATTATAAGGGCCACCAAGCACAGTGAGAGGAGGGTGCCTTGTTATCCTCTTCAATGTGTGCTTCTCTTTGGTGCTACTCCTTTTTATTTATAGCTTCTTCCATTCTGTAGGGTAATATGAGGTGTTCCAGGGTCTCCATACTTCTGTCTTCAGCTGTATGGACTTTTTTGACACCAAAAAAGTCCATACACACACCTGCTTTGTGCTTCGAAGTTTCTGTGTTAGTGATGCTTTTGACGTGGCTCCACCAGCAGTCAGGTGGACTCATCTTGTTTTTTTTTCCCAGTTCTCTGCAATCAATGAAATTTCTAAATGAGAGCCCTCAGAAAAGGCTTCTACTTTTTTGTCACACTTTGCCAGTCAAATCTTCAGTCTTTTTTCTTGCTTGAAGATAATACTCCCCTAAGCCTTGTTTGGTTGCAAATGGGGCATGAGTGCCTCTTTTTAGTAGCTATTCTTAGATATTAAATGAGGCAGGTACAAATCCAAATCAAAAGGAGATAGTGGGGTGGAAACAAGAGTGGCTCATCCATCAGTACTGACCAGTGCTAATAAGAAATTAATTCTTCCTGAGCTCTTCTCACCATCACCCATTTTTATATTCATGCCCAATGAAGCAACATGATATAGTAATCAAATATTATCTAAATATATAACCAGTCTTGAACTGATCTAGTGATGTTCATTATTGCTGTTGTTAATTTGTGTATGGTCTCTGCCCCAGAGAGCTTACATTCTCAAAATGGACAATAGCAGAATCGTAAGACAAGGAAGTGCACAGAAATAAGATAATACAGTCTCAACAGACATGAAGAGAAATTCTGAGAAATGGAGAAATGAAACTTATACTTTTTCACAGATAATATGAAATAAACTACCTCTTGTTTACATAGGAATCAAATGAAAACAAATCAAGTGGTTTGTGCTCCCTCTTCTGGCTCTGTTGTATGTGATACGGTAATAAAGCTTGTTCCCTGAAGAGATCTGATAGTGGTATTTTTGTGTCCAACACATCAAATGTGAGAGTAAAGGCAAGAAAATATAGATTGCTTTGAAAGCATGCAGAATTATTAGGAATTAATATTATTCAGACTGTCCAAATACGTTAAGAAATAGAACGTAATGTTAAATCCATGCACATCAACTTTTGTGTGTCTAATCACTTTGATCACTTTTTTTTTTTTTTTTCCAAATTTACAATTGAAACAAAACTTTATTGGAGCTTTGACTTAACTAGCTAAATCTTCAGAGTGGGGTAAATTTATCCTTGAAAGAGAACATGCATAAATGCACTGTGTACAGGAGTGCATTGTTTTTCTAAGGCAGCTAGAATTCCATTGGACATGTAATAGATTAGAGGGTGGTGGACCTAATTTCTGCCTTTATCACATCGCAATTCAAGGGAAATGACAGTGATTTCACTGTGAAGTTGGGCTAAGTACATGAATGCCAGAGAGCCATTCATTCATTATAAGAAAGACAAAAAGTAAAATCCACATTTCACTGAAGTCAGCAGAATTTTTGTCTTTGGCTTTAAATAGACAGAGAAATGTTCCAGAATGCATAGGTGTTTTCCAGTTCAGCTTGTGAGAGCGAAGTACTGGAGAGGTCGGTACACTAAGGAAGATTCTCGTTGCTGGATTATCTCTTTGTGAACTAATTGAGTTTATTGTGTTAGCATATGGTTCTGCTTTCCCAAACTCTTTTAACCATACAGTACTCCAAGAGAAATACAGGAATGCTGATCTGGTACTGAGTTCCTTTATGTAATTAACTGAAGTGAGTAAAAACAGTAACCTTTTGTGTTCTTATTTGACTCCTTAG
Seq C2 exon
GGTGTTGTTGCTGATACTTCTCCACAGACAGTAGCATCTTCATCACAGGAAGCCAGTGGTCAACAGCAACAGATGACAGTGGAAACATCCAGTGAACATGCACCTGCATATTCTTACCAACAATCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011439:ENSGALT00000018654:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=NA C2=0.980
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]