BtaINT0124259 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013645 | RFFL
Description
ring finger and FYVE-like domain containing E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:24821]
Coordinates
chr19:15397462-15400325:+
Coord C1 exon
chr19:15397462-15397485
Coord A exon
chr19:15397486-15399959
Coord C2 exon
chr19:15399960-15400325
Length
2474 bp
Sequences
Splice sites
5' ss Seq
ACGGTACGT
5' ss Score
11.34
3' ss Seq
CCTTTCTGCTCTGCGTCCAGGGG
3' ss Score
8.54
Exon sequences
Seq C1 exon
TGTGCAGCGCTGAAGACCAAAACG
Seq A exon
GTACGTAGCTGTTCCTGTTTGGCATCAGGCCGAGGCCCTTCACTCTTCTCTCCTTCCTCCCCTTCAGCCCTTACTTCTGTTAGCCGTCTGAGAACTCTGAGCATATCCACATCCCGGTGGGGGAGCGGTGCTGGGGGGGATGTTCACTGGGAACCAGGGCTCCTCAGCATCTTTAGAAATTCCCATCCCCGTCCCTGCGAAGGGTGGAGTGGCAGGACACCTCGGGCAGCCTGATCTGCAGGCCTCTGGTGGTCAGAGCTCAGAAGCCAGCCTCTGTAAAATCTTCGGCAAAAGCCAAGGGGTGGCACTTCTGGTGCATTGCCCATAGTCCTGGGGCTCAGGCACCATAGCTTTCACTCCATCTTGGTCTGTGTGGGAGGGTCTCTGTGTACCTTCAGGGAAATCACTTGGGATGTTCATCAGCTTCAGGTACCAACTGAAAAGCAGGGGTGGTGAGCTGAGAGCCTTGTGTGAATAGCGTGCTTCGTGGCACTCAGCTGCCATGTGCCAGCCTGTATGTTAAAGACCACTCGCAGGTCTCTGGGCACCCCCAGAACGCACTGCAGGAATCTGACTGCAATCACTCTAAAACATGCTAGGCCTTTTTGTGAAAGCCTCAAGGCTTTACAGCCATTTTACTGACAAATTTGGAGTGTCTTCTGAAAAAGTTTTAAAGTGCTTTTCAGGCCCCTACACTACTCTGAGAACATCCTTTCTTGGGGAAGAGCTCTCACCGTATTGCTCAGAATGGGGCACGGTCTTCGGGCTGATACATTCCCAAGAGTTGAGCATTTGGAGTTCTAGACCCTCACCTGATACCAAAGTTTGGCCATCCACTTGGGGTCTTTCTGATTCCCTGGGAGAATGCTGGCAACTGAGTTAATGAATTTGTTAATCTTGACAGAAGTAATCTGTAATAATTCTGTAAATTACTCCAGCTCATCTATATATTTATGGTTGAGCTATTATATAGCTCATACCTATTATATATATAGGTATTCCTATTTATATATATGGGTGTTTATATAGTTTAGTTGTTTCCAAATGTTCCCTGTCAGGGCCACCAGCTCCTCACAGGAGTAAATAGGTTTCACTGCCTCACAGCCCGCCCACCTTGTGTTTCTTGACTTTCTGAATAGTCCAAGGAACAGGTAAAGAAAGTGCAGAAGCAGTGGAGTATGAGAGCTGCCTGTGGGACCGTAGAGGTGGCTGTTATAAGACCAGTTCCCTGTTTATGGCTACCTGATTCAGGCTGCCATTTTAAACATGCTGGGAAGGCTTGGGTTTGGGTACATGAAGGTTTTTCTGTTCCTGCAGCTGACCCCGGATGTAGGTCATGCCCACTGTGTCTTCCCACTCGCACAAGCCAAGTTAGCCTTGTTGAGAACTGTGCGCTGAGCAGTTAGTACTGTCTTCACAGCCCCTGCCCTCAGGCCACTTTCCTAGAAGCCAGCCTACCTGGATTTGAATCTTTGGGCAACCTATTTAACCCTTTGGTTTCACTTGCCTCACCCATAAAATGAGTAATGAGAGTACCTACTTCATAGTTTTTGTTGGGGCTTCCCGGGTGGCTCAGTAGTGAAGACTCTGCCAGTGCAGGAGACACGGGTTCAATCCCTGGGTCAGGAAGGTCCCCTGGAGGCAGAAGTGACAACCTGCTCCAGTATTCTTGCCTGGAGAATATACCATTGACAGAGAAACCTGTCGGGCGATAGTCCATGGGGTCACAAAGAGTCAGACTAACGCGTTCACTTTCACCTCAGGACTGGTTTTGGGGATTCAAGACGACTATCAGCCCTCAGAGCACACAGCAGATACTAAGTATATTATTATCTCAATAGAAATTGATTCCATTTGTTGAATTTAGGAGCCCGTCTTCTAGTGGGGGAGACAAGGAGCAAACTCACAAATTCTGAAAGCACTGAGGAGCAGTCACGGGGGTGTGGGTGAAGTGTGTGTGGGAAGCAGAGAAGACAGAACCATAGTCTCTGCTGGGCTCTGGCACCACGGCGTCTCCTCCAAGGAAGCCTGGGGAAGCAGGTCGGGGCCCTGCAATCCTTGGCTTTCTTTATTCAGTTGGGGGTATGTTTACAGAGGAGTCTCATGATCCTTCATGAGCAGTTCATTACAATTCTATTGATGCCTAAACTCTTCTCAGCCAGTTTTATATCTTTTCAGCACGTTCTGCCTCAGGGAATATCGAGTCCCTCCATGGCACTCCCTGGCCTTATTACAGCCTCAGTTGTCTGAACGTTACTTCTTTCTATGCTTTGAGGCCTTTGCCTTATTCTCATGTTCCGGGATGTCTTTGATCTACAAGTGCTCGACTATTCAAATCTATAGCCTAACCTATGGAGGTGCAGATTAAACAAGCAGGTGGAGTTAGTTCCTAGGGAGACGTTTCCTTCTCCCTGAGGGAAGTGTGTGGGTCTGGGGGGCTGTGCCCCTTACTCTCCTTTCTGCTCTGCGTCCAG
Seq C2 exon
GGGGAGCAGTGCCGTCCAGCCTGGAGGAGAACCTGTGTCGGATCTGCATGGACTCGCCCATCGACTGTGTTCTGCTGGAGTGCGGCCACATGGTCACCTGTACCAAGTGCGGCAAGCGCATGAACGAGTGCCCCATCTGCCGGCAGTACGTGATCCGGGCCGTGCATGTCTTCCGATCCTGAGGGCCTGTGCCGGCTTCTGCAGTGCCTTACGGGGACAGAGCTCCAGGTGTCTGGGCCCACAGTTGGCGGCTTGCAGACGGGCAAGCTAACCAGAAAATGCGCAGTGTTCCCAAGACCAGGGCGAGCAAAGATGCTGTGTCATCTCTGGGCATGCCTGTCTTGCTTCAGAGGTACACTGTGCGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013645:ENSBTAT00000018136:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF139201=zf-C3HC4_3=WD(100=75.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]