RnoINT0126266 @ rn6
Intron Retention
Gene
ENSRNOG00000007596 | Rffl
Description
ring finger and FYVE-like domain containing E3 ubiquitin protein ligase [Source:RGD Symbol;Acc:727916]
Coordinates
chr10:70159607-70162277:-
Coord C1 exon
chr10:70162254-70162277
Coord A exon
chr10:70159988-70162253
Coord C2 exon
chr10:70159607-70159987
Length
2266 bp
Sequences
Splice sites
5' ss Seq
ACGGTATGT
5' ss Score
9.94
3' ss Seq
TTTCTGCCTTGTTTATCCAGGGG
3' ss Score
9.51
Exon sequences
Seq C1 exon
TGTCTGGTAATGAAGACCAAAACG
Seq A exon
GTATGTAATTGTTTCTGTCAAGGGTAGGCTGAGGCTCCTAGCTGTGTTGTCCTTCTAACATCAACTCTGATGATGGCTATTCATAGTTGTAAGAATCCCAGAGAGGCTGTAGAAAAGTAGAGTCAGGCGTTACCCTTGCCCCACCCCTATGCAGGAAGTTCAGAGCAGCCTAGGGGCTTGGCTGAATTAGAGCCGACTCCCTGGGTGCAAAGCGTCGTGCTCCGTTTCTCCAAGCAATCTGTCTGGAGAGAGTCTTACACATTCAGAGAGATCGTTTACGTTTTTTTGTTTTTGTTTTTTGAAGACAGGGTCTGTCTGTCTTCAACTTACTATATAGACCAAGCTGGCCTCAGGTGTTTGCCAACCAAACCAAAAAAGCACAAGGGTGGTGACCTGAGAGTCCTCTTTGAATGGGACAAAAGAGGTGTTTCGTGGATGCCCTCTGAGCTCAAATTGCATATCTACCTGCCTACCTTAACTCCCACTAGTGTGTTAACAGTTTCCCTCAGAACACACTGTAGAGCTTGGTTGCTCGTGGGACACTTTCACATGTATTGTACCCTCTTGAAAACCTTGAGGAGTGTGATTGTAAATTTCCCAAAAGAGAATATTCTCAGTGTTCCATCCTGTAGAGCACTTTAAAACTTTTCAGAAGAATTTATCCCAAGTAAAATGGTCGAGAATGGGCAGAGTTGAGCTTACTATTTAAGTCCCTGTAATCATCTGGGTTACCCCACCCCACCAATACCATGATGAGATTAATCTACGTGTTACCATCCTTCCTTCTCCCCGTTCCTTGGAGAGTGCTGACATGTTTGTTTCTCCTCAGTGAAGTAATGAATGAGTAAGATTCTGTAGATGACTCACCTTGTCTTAGATATGCGTGTATCCTTCTAACCTCTGTATTAAGGCCACAGGAGGCTTTAGAAAGGTTGGGCTCTCACAGTCAACCACCTGCAGCGGGAAGTGTTCTTTGACTTGATGTGTGTTTCATATTTATATTTGAGTAGCTACATGATAAATTTCCAGAACCACCAAACTAGTAGTAAACAAACATATACCAGAGGACTTATGCATTCAATGACTTCACTTTTTAGACTAGTCTAGAACAGAAAAAAGGAGGACTGAAAACTTAAAAGCAACAGAGAAATGGGGAATTCCTTTGGAGAGTTGCCAAGTCCAGTTGGGAGCAGTGTCTAGTATGAGAACAGTTTTGTTTTATGGCTGCTTAGTTTAGGCTGGTTTGACACACAGGAGATCGGTGGGTTTTTGACTATGAAGTCTTTCCTTAGCTGAAGTCGGATAGTTGTTGTGTCCACCACTAGGAAAGCCTAAAGATAGTATTTATTGAGAATGCTACGTACTGGGCAGTTCTTACTAGTCTCTGCTCTTGGAGCTCTTATCCCAAAGGCCACTATGTCATGAGCCTCTCTGTTTTGAATGTGGACTATCTCAGCAGCCCTGTATCCTTGGGCAAGCCACTTAACTTTGGCTTTTAGGACCCTGCCTGACACACGGTAGGCAGTTAGTCAATGTGAGCGGTTCTCATTCCCTAGGCAGAATGTTCATTATCAGATGTTTAAAGAATACCTACCATGTGACTCATGTTTTGGGAATTCAAAGATAAGTATCTGACCTCCAAGCATAAAGCAAATGCTAAGCTTATGATTACCGTCTGAGTAAGTTGAATTAGAAGCTCTTAGTCTACTGTGGGAGATAAGTGAATTATCATGCAGGATGATAAGCAGTCAGGGGTATGAATAAAATTCAATGGTTGTAGCACAGAAAAGGGAGCAGTGTATCTGCCTTGTCCTTCTATCAGGAAGTCTTTTCAGAAGCTTAGAGGTAGGTAGATCGTTGGATAGCACATGGGGTCTCCCGTGAATCTCAGCTTTATTAAATCAGGTCTATGTTTATAGATAAGTCTCAGGATTCTTAATGAACCATTTCTAACAGTCCTGTTTCTATCCAGACTTTTCTGAGCCAGTGTTATCTTTTCTGTGTATTCTGCCTCAAGGGGTGTGGTGCCTAAGCATTGTTAACTCACTGAATTACAGCCTCCTTGTCCTGAGATGTTTTTGATCTGAGTACAGAACACAAACCTTTCTGTTAGCAGGAGTAGGTGCTCAAGCAGCTGGGGGTGTGGTTTGGTTACTGAGGTTTTTTTTTTGATTGGAGCTGTATTTGAGGGGAAGTGTGGGTTTGGGGTTTTTCTTTGCCCCTCTGGAGACATAATCTATTGGTCTTTTCTGCCTTGTTTATCCAG
Seq C2 exon
GGGGAGCAGTGCCTTCTGGCCTGGAGGAGAACCTGTGTAAGATTTGCATGGACTCACCCATTGACTGTGTTCTGCTGGAGTGTGGCCACATGGTGACCTGTACCAAGTGTGGCAAACGCATGAACGAGTGTCCCATCTGCCGGCAGTATGTGATCCGAGCAGTGCATGTCTTCCGGTCCTGAGGGCTAGCATTGGCTTCTTCAGTGCCTTACAGGACATAGCCCAAGATGTCTGGGCTCGGGGTTGGTCCTATGCACAAGGGCAGTCTATTGTGAGAAACTGGCAGTGTTCTAAGACTAGGACAAAAGGAGGTGCCTAGCATGCCTGTTTTAGGTGGCAGAGCCCAAAACCAGTGGTAACTGGTTCAGATCACATGGGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007596:ENSRNOT00000010015:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.704 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF102084=Armet=PD(3.2=33.3)
A:
NA
C2:
PF139201=zf-C3HC4_3=WD(100=75.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]