MmuINT0133914 @ mm10
Intron Retention
Gene
ENSMUSG00000020696 | Rffl
Description
ring finger and FYVE like domain containing protein [Source:MGI Symbol;Acc:MGI:1914588]
Coordinates
chr11:82802449-82808536:-
Coord C1 exon
chr11:82808513-82808536
Coord A exon
chr11:82806190-82808512
Coord C2 exon
chr11:82802449-82806189
Length
2323 bp
Sequences
Splice sites
5' ss Seq
ACGGTATGT
5' ss Score
9.94
3' ss Seq
CTTTTCTTTTGTTTGTCCAGGGG
3' ss Score
9.33
Exon sequences
Seq C1 exon
TGTCTGGTAATGAAGACCAAAACG
Seq A exon
GTATGTAGTTGTTTCTGTTAAAGATAGGCTGAGGCTCTTAGCTGTTTTGTCCTTCTGATTTTAACTCTGATGATGGCTGTTCACAGTTTTAAGAATCCCAGGGAGGCTATAGGAAAGTAGAGTCAGGTATTGCCCTTGCCCCACCCTATGAAGGAAGCTGACAGCAGCCTAGGGGCTTGGCTGGACTGGATCTGACTCCCTGGGTAGGGAGTATCATGCTCAGTTTCTCTGAGCAGTCTGTCTGGAGAGAGTCTTAAACATCCAGAGATATCATTGAAGTTTTTATGTTTTTGTTTTTTTGAAGATAGGGTCTGTCTGTGTAGTCCTGGCTAACTGGGAACTCACGATATAGACCAAGCTGGCCTCAGGTATTTGTCAGCCAAACCAAAAAGCACAAGGATGGTGACCTGAGAGCCCTTTTTGAATGGTAGCTAAGGGGACAAAAGAGGTGGATGCCCTCTGAGCAAAAAATGCATATCCTACCTGGCTACCTTCACTCCCACCAGTGTGTTAAAGGCCACCACTGGGGGTATCCTCAGAGCACACTGTAGAACTTGGTTGCCTGTGGGATGTTTTCACATATATTGCACCCTTTTCGAAAGCCTTGAGGGGCATGGTTGTAAATTTCCCAAGAGAGAATATTCTCAGTAATGTTCTAGTCTGTAGAGCACTTTAAAACTTTTCTAAGTAAAATGGTCCACTGTGCAGAATAGGCAGACCTGAGCTTTCTACTTAGTCCCTGTAATCATCTGGGTTACCCCACCCCAATAATTCCAGGATGAAATTAATCTATGTGTCACCATCTTTCCTTCTCCCCATTCCTTGGAGAATGCTGACCACTGAGGGGATGTTTATTATAGTTTCTCCTCATTGATGACTGAATTTCTGTAGATGGCGCCATCTTGTTTTAGATATGTGTGCACCCTTCTAACCTCTGTATTAAGGCCACGGGTTTTTTTTTTTTTTTTTTCTCAGCCAGCCACCTGCTATGGGAAGTGTTCTTTGACTTGATGTTTCATAGTTATGTATGAGTAGCTACATGAAAAAGTTCCAGAACCAACAAACTAGCAATAAACAAATGTAAACGAGAGGACTTGTGCATTCAAGTGACTTTACTTTTTAGACTAGTCCAGAACAGAAAAAAGGACTTAGAAGCAACAGAGAAGTGGAGAGTTCCTTTGGAAAGTTACCAAGTCCTGTTGGGAGCAGCAGCAGTATGAGAACAATTTTGTTTTATGGCTGCTTAGTTTGACACACAGGAGATAGGTGGGCTTTTGACTACTGAGCTGAAGAAGGATAGTAGCTGTGTCTATCACTAGAATAAGCCTAAAGTTAGTATTTATTGAGAAGTCTGGGCAGTTAATAGTATCTTGATAGTCTCTGCTCTTGGAGCCCTTATCCAGACGGCCAGCATGCCTATGCCTCTCTGATTTGAATGTGGACAACCTCAGCAGCCCTATATCCTTGGGCAACCCACTTAGCTCTGGCCTACGTTGTCTCATCTGTAAAACCCACTTTAGTACCTCTGGGTTAACACAGAAAGCTCTTAGGACCCTGCCTGACACATGGTAGGCAGTTAGTCAATGTGAGCAGTTATCATTCCCTGGGCAGAATGTTCATTATCAGATGTTTAAAGAATACCTACCATGTGACTCATGTTTGGGGAATTCAAAGACAAGTATCTGACCTCAAAGCATAAAGCAAATGCTAAGCTTATGATTACTGTCTGAATAAGTTGAATTAGCAGCTCTTAGTCTACTGTGGGAGATAAGTGAATTATCATGCAGTACGATAAGCAGTCAGGGGTGTGAATAAAATTCAATGGCTGCAGCACAGAAAAGGGAGCCGTGTGTCTGCCCGTGTCCTTCTCTTAGGAAGTCTTTTCAGAAGCTTGGAGGTAGGTAGATTGCTGGATAGCACATGGGCTCCCCCGTGACTCTCAGCTTTATTAAATCAGGTCTATGTTTACAGATAAGCCTTAGGATTCTTAATGAACCATTTTAACAGCTCTGTTTATATCCAGACTTTTCTGAGCCAGTTTTTATCTTTTCTGCATATTCTTCCTCAAGGGATGTGGTACCTAAGCATTGTTCACTGACTGAATTACAGCCTCCTTGTCCTGGGATAGTTTTGATCTGAGAGTACCAGACTCAAACCTTTGTTATGTTAGCAGGCGTGGGTGCTTAACAAGCAGGTGGGGTGGTTTGGTTGCTGAGGTTTTGTTTTGGATGGTGCTGTATTTGAGGGGAAGTGTGGATTTGGGGGTTTCCTTAGTGCAGGCCCTTATATACAGAGACATCATCCTTTTCTTTTGTTTGTCCAG
Seq C2 exon
GGGGAGCAGTGCCTTCTGGCCTGGAGGAGAACCTGTGTAAGATTTGCATGGACTCACCCATTGACTGTGTTCTGCTGGAGTGTGGCCACATGGTGACCTGTACCAAGTGTGGCAAACGCATGAACGAATGTCCTATCTGCCGGCAGTATGTGATCAGAGCAGTGCACGTCTTCCGGTCCTGATGGCTAGCATTGGTTTCTTCAGTGCCTTACAGGACATAGCCCACGATGTCTGGGCTCAGGGTTGGTCCAATACACAAGGGCAGTCTACTGTGAGCAACTGGCAGTGTTCTTAAGACTAGGACAAGCAGAGTTGCCTGGCATGCTTGTTTTAGGTGGCAGAGCCCAAAACCAGTGGGAACTGGTTCACATCACATGGGTGAATGCCTGCATCTGTGATCATTGGATGGTGATGGTCATCAATGAAGAGGTCTTTCCAGAACGTGGACCAGTCTCTCCTGTCCTAAGATCCATTTCATACATCTGTACACCACTCCTCCTGTCAATCATAAGTTCTGCTAGAAATGGTCTTTCTCCCACCCCACCCCCAGCACATTTGGATTTAAATTTCTGGTCTCTCTGGCTTTCTGTGTGTTAATGTATCTTTTAAGTCTTCTCATTTGCCTAAAACCCATTTCTTTCTATGGACCAAAAAAATATGTTAATTGGGCCAATAGTATTCCTCAGGTCAGAGTTTGGATCAGTAAACTGACCTCTAGTGAGAAATTAAGTCTTAAGTGATATAGAAAAAAATTCTAGGTTGAGTCACTTCTGTTTAGTATTGGGGTTGGAAAGAACCAGTCTCTGACCTAACTGCTGGGAAGTCCTTCAGAGATGGTGCTGTTTCTCTTTGGGTTTGACTTTGTATCATCCTTAACTTTGGATTATGAGGAAAGAGAAATCAAGGCAGCGGCTTTGTCTTTGTCTTCTGGTCCTCATTTTCCAGCATGCTAAAATACTTTAAAATTTTTTCTCTTCCTTTGGTCTTAAATTTGCTTACTGAAAGCATAGGAACTTCAGCAAGGAGCTGTTCTCTAGCTTGGCTGTACATGGAGTTCTTGGAAAGCAGACACACAGGACAGTGCATGAGGCACTGGATGTGTTAGACTATGACTACGGCTGCTGAAAAGTCTTAACTGCACTCTGTTCTCAGCTGCTCGGGCAGGTCAAGACAAGCATTCTTTAAGTCATGATTGCAGCCCTCCCAGGGGCTTTACACCACTGACACAGCTGAGAACAGCTCAACAAAGCACAAAATATACTATCAGAAGAGCTGTGTGTTTCTCTGTGGGGTGTACGCTCAACTTGGCTAACACTACCCTTCACTGTGTAGCTATGTGAGACTGGAATAACCAACCACTCACTCATGACTGACTTGGAAAAGTGGAGGGACGCCTCTTAGGGGACTATTAGAAATGCTTAGGCTTCTCCACTGAATTCCTTCAGAGGATCAAGTAGTTCCATGAAGCTGTTGTCAGAGATGCCAGGCCCACTTACCTCTGCATTCGAAGTCCAGATGACCAGATTTTGGGTCAAAGCTTTTGTGGATGTCAGGGATTCAGATCCCTCCACAAAGACTCCCTTGCCCTCCCTCCCTGAACAGTGAATGCTGTCGTTTACAATGTTTCCAGATTAGCATGCCCACTGATTTTGCTGCTCCTGGACTCCACTGTGAAACAGGTCTGATCTTACAGCTCAGTAAGACCTAAGAATAACATTAAAGCCGGCTGGCTCTCCCTCATAACTGCTTTCTCTTCTGAGGCCTTATCTCCCTACCTCCTGTACAGGAACAGAAAATACACTGATGGCTGTGGTTAGCAACCCAAGTAACAACCAGAACCCATGCCATTTAATTTGGCGATCTTACCTTTAAATCTTTACCCTTGGTGTTCTCATTTGGGGGGGAAAAAAACCAAAACATGTCAAACAACTTTATTGTTAAACCAAATGAAAGTTGGAACCCATTCCAGTTAACATCTCAGGTAGAAAACCTTAATTTTTTTTTTTTTTTTTTTTGGTTAAATACCTGAGCCCCCTTTTTGTTCTTCACGGATCCTTGGTCTTAATGTTGAAACACCTAATCTTTCCAATTATTCTGTGGATTTTGCTGATTGCACCAAGATTTCAGTTGAGACTTAGTTTTCAAAGATGCTGTTTCATAGGTTGGAAATAGCCGGTTCTAAACTAATAAGCTGTAAAGGAATTAATAGTCTATGTTGTACAAATTTGTTGAGATCTCTCGGATGTAAATGTGTAGCTCCAAGTGGCTTACATTAAGATTTTCTCACCTGGGTGTTAAAAGCATACCCAAATGTGTATTTTTTTGTTACAGAGCTCTGCTTTATAATTTTGTAATAAAGTTTAAATACAGATGCCTGTCCCATCTGGTGTGTGGGGGATAATGCCAGAGAACTTGTAAATGCAGGCAGACATCAGGCCACATGCAGAACATTGCTCTTCAGAGACTGCATCCCGCTTCTGGAGGTGCTTGGCCACCTGGTCTTGATCAAGGTACCCTTGCTCTGTGGTGTGACTCACCCAAGATCACAAGAATGCATTGGAGAAACTGTGGGACAGTTGGAAGTGGAGCTAAGTGTAAGATTCTCAAGAGCAGACGGGAAGCACCATGTGAAGTTAGTTACGGTCCCACTGTAGAGGGGCCTTCAAGAGCTAAGTGGAAAGGAACAAGTTACCCTGAAAGACTGACAGTAGGTAGCTTTTGAATACAGACAAGTGTGTCTCAAAGGTTGGCCCAGCCTAAAGAGCAGACTACAGAGTAAGCACTGGCCTGTACCCACCTACCTGAAGAGGTGCCTGAGGGGAGGGGAGTGTATCACCCCTGGGAGAACTGGATGAAAGGATTCTACCCTGTCTCTTGCTGATGGCTGGACCTATTGAGCACCCAGCAATGAACAATGCCTGTCATCAACTGGCACTATTGTAAACAAAGGCCACAGAGGGCACGTTTCCAGCCGTGTGGGAGGTTTCAGGTGATGGTCCTTAGGGTTGTGTGGAAAGACGGGAAAAGATACAAAGGTCTTCATACAGTTTAACCTCTTTGCAAAGATCTGACAGTGAGTTGGAGTAAATATATAGTAAGGCATTAAAGGGACAAAGGGCTGAACTTTTGGCCCTGTGTGATGAGGAAGAATAGTCTGATGCTGGACCAAGCTGCTTGGTCCAAGTGTTCAAAGCGCAAAGCAGCTTCTGCTTGAGACTAGAGTTAAATGCTTTACTTACCAGACTGAATGTTGCCTACTCTGCCCTCATCAGAGCATCTACATCCATGTCTTAAAGAGCAGGTGAAAGATAGAGCCAGACAAGTAAGCAACCGCCTGATGGGATCTTACTTTAGGAGTTACATGGGGTGGTGGGTCTGTATCTTAGAGGCTCACAAGTTCCATCCTAGTAACCTAGCTCACAGGAGGTGGATATGTAAGCCTGCTGAGTTGGTAAGAACAGAGAGAGGATTCTCAAGAGGTGGCACAGCATAAACAAGGAAACCAGTCTCCCACAGTTCCTGGCGAGGGCCAGGCTTAGACCTGAATGCGAACTTTTAACATGAGTTGGTAAGCTAGGCCTCCTCCTGGACAACCTCTGAACCAGGGTGTGCGCTGCACACCTTAAACAAGGTGTCTGAGGTTAGTGGCAGCTGCCCAGTGATTCAGCAACAGTGACTCTACCCACTCCTCTTGAACTGATGCTCAGGTGATATGTGATGTCACTGGTAACTTGAGACCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020696:ENSMUST00000074515:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.685 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF102084=Armet=PD(2.9=33.3)
A:
NA
C2:
PF139201=zf-C3HC4_3=WD(100=75.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types