BtaINT0125534 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011588 | RNF123
Description
ring finger protein 123 [Source:HGNC Symbol;Acc:HGNC:21148]
Coordinates
chr22:51062152-51063137:-
Coord C1 exon
chr22:51062960-51063137
Coord A exon
chr22:51062227-51062959
Coord C2 exon
chr22:51062152-51062226
Length
733 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATG
5' ss Score
5.99
3' ss Seq
CCTGTCACCCCACCCTGCAGGCT
3' ss Score
8.19
Exon sequences
Seq C1 exon
GAGAAGATGCAGGACATTTACTGGCTGCTTCGAGTCTGCCTGCGGACCATCGAGCACGGTGACCGCACGGGTTCTCTCTTTGCCTTCATGCCCGAGTTCTACCTGAGCGTGGCCATCAACAGCTACAGCGCCCTCAAGAATTACTTCGGCCCCGTGCACAGCATGGAGGAGCTCCCAG
Seq A exon
GTGATGGGGCCATTCAGGCTGGGAGGGGGCAGAAAAGGGGGCCTTTGCGGAGTGAGCCCCGGGAGCCCTGTTCTGAGCCCCCATGACCCAGAAGCACACATCCCACATGGGCTCAGACAGCATCAGACAAGCATCTGCACAAGTCCTGCTTGGCGGAGAGCCCTGTCCTAGGACCAGCAGCCACAGACCTAACAGCTGCTCCCTGCGTGAGGGGGAGAGCAGACAAGATGGAGTACAGGCTGTGAGGAGCCCTGCCCCGCCCTGCCAGGACTGTCGCTTCCTTCTTGGTGCTGCTGCAGCCCAGGAGCCAGCCAGCCTCTCACCCTCCATCCTGGCACTGACCATGGGGTGTGGCATCCCACGCAGGGGCAGGTGGGCTTGCAGATCACAGCAAGGAGTGGGGGCCCTACCGGTGGCCATGAGGAGCAGGGGCTTTGCGCAGACCCCGGATTCCAGGATGGGCTTGGCTGGATCAGGCTGTGGGCTTTTAGGCTCCTGGCCTGTCCCCTGCCCTGCCCTCAGCCTCGGGGCCTACCCAGCCCCCATCCTGAGTCTGTGCCTTAGTCTCTGGCCAACCATTAGTGAAGGTACTGCCTAAAGTCCCCAGATGGCAGCTTGGGCCCAGACCTTGGAGCTGGGTCTGGAGCCCGCTCCCCAAGCCCACCACCAAGAGATGTGCCTGCTGCTGGCGTCTGCACTCCCCACCAGCTCATCCTGTCACCCCACCCTGCAG
Seq C2 exon
GCTACGAGGAGACCCTGACCCGTCTGGCCGCCATCCTTGCCAAACACTTTGCAGACACACGCATCGTGGGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011588:ENSBTAT00000045376:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGGACATTTACTGGCTGC
R:
ACGATGCGTGTGTCTGCAAAG
Band lengths:
238-971
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]