GgaINT0022718 @ galGal3
Intron Retention
Gene
ENSGALG00000002486 | RNF123
Description
NA
Coordinates
chr12:2198983-2200232:+
Coord C1 exon
chr12:2198983-2199160
Coord A exon
chr12:2199161-2200157
Coord C2 exon
chr12:2200158-2200232
Length
997 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CTCCCTCCTTCTCTTCACAGGCT
3' ss Score
12.51
Exon sequences
Seq C1 exon
GAGAAGATGCAGGATATCTATTGGCTGCTGAGAGTGTGCATCCGCACCATTGAGCACGGTGACAGGACAGGCTCGCTTTTTGCTTTCATGCCAGAGTTCTACCTCAGCGTGGCTATGAACAGCTACAGCGCTCTCAAGAACTACTTCAGCCCTGTCAATAGCATGGAGGAACTTCCAG
Seq A exon
GTAAGGGGGTGGGGAGGCCTTGCTAATTCTGGCCTGGTAAAGTCTAATTAAAGGCCCATTCTTGTGATGTACTGGTAGCTGGACATCCCTTCTGTACCCTTGCCTGGCTGTGATGTCCTTCACTTTGTACTGTCTGTGTGATGTGCGACAAGTGCTGAATGCTGTCCCTTGAGTAGGTGCCCATTGGTGACCTATGCCCTTTACTGAACTTAGGTGGGGTGCCTGTGCCTTGCCCAGAGCTGTCACAGTATTAGCTGTACTGAAAATCATTGGCAGCTGTGTGTTTCCAAGGAGGCATTGGGAATGGCTTGGGATGCAAGAAGATGTCACGGCCCTGACGATGTATGCCATTGGTTGCTGGGTGGGGGGATTCATGCCATGAGTGCAGGAACTGGGGCCGTTTTCAATTCCTCATGGGACTTGGATATGGAGATGAGCACCCACTTCATGCCAAGCGTCTGTATTTAGGTGGATTCTGTCTGTGTATGCTTTTCCTGGCCACATCACCCTAGCAGTTCTTAGGCTTTCCAGAGCCTGCAAAGGCAAGAGCTGCTGCTCCAGCCAACAAGATATAGCTAAAAAGTGTCCATTAATTAGAAGCTGTGCAGGGAGCAGCAGAATTAAGCAGTAACAGACTTATTGCTTCAGGGCCTGCAGACTGGACACAGCTTCTTGGACACATAGATCTAGGGTGCTATTTGTGTTGCTCAGCCCCTTCTGCATTACACTTCTTTCCCTTGTCATCTGTCTCAGTTGCTTGGTTTTTTGGTTTACCTTTCTCTGAGTAGCTGCTTCAGACTTCATGATAAGGCAGGAAACTGTTTTGCAGATACATGCTTTCCCAGCTGTTTGTTTTGACAGTTGGACAGGCAAGAAAGCTGCAAAGTTAGCTAAGTTAGCTGCTGCAGGAATTCATCCCATTGCCTGTCCTATTGCAGGACCACAGATCTGCCCACTGGCTCATTGCATGACCACTGCTCCCTCCTTCTCTTCACAG
Seq C2 exon
GCTACGAAGAAACCCTGATGCGCCTGGCTGCCATCCTGGCCAAACACTTTGCTGACTCAAGGATTGTGGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002486:ENSGALT00000003917:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGGATATCTATTGGCTGCTG
R:
CTGTGCCCACAATCCTTGAGT
Band lengths:
246-1243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]