RnoINT0127636 @ rn6
Intron Retention
Gene
ENSRNOG00000033378 | Rnf123
Description
ring finger protein 123 [Source:RGD Symbol;Acc:2301394]
Coordinates
chr8:116836221-116837329:-
Coord C1 exon
chr8:116837152-116837329
Coord A exon
chr8:116836296-116837151
Coord C2 exon
chr8:116836221-116836295
Length
856 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATA
5' ss Score
4.58
3' ss Seq
CTCACTGCCCTCTTTTGCAGGCT
3' ss Score
11.24
Exon sequences
Seq C1 exon
GAGAAAATGCTGGATATCTACTGGTTACTGCGTGTCTGCCTACAGACCATTGAGCATGGGGATCGCACAGGATCTCTCTTTGCCTTCATGCCCGAGTTTTACCTAAGTGTGGCTATCAACAGCTACAGTGCCCTTAAGAATTATTTTGGCCCTGTGCACAGCATGGAGGAGCTCCCAG
Seq A exon
GTGATAGGGCCAGTCATAATTTGGGGAGTGGGGGTGGGGTGTGCAGACAGAGACCTGCAGACTGAATTTGGCAAGCCAAGGTTCACTTTTGTGACCCAAGCATGCATGTGTGTGTGCGTGCGCGCTTTTGTACTGAATTAATGCCTGCAGGCTTGGAAGCTGCAGTAGAGGTATACCAAGGACAGAAACTGGGTGGGGCCCTTAGCTCCTTTTCCTTTGCTGGTGTGGTTGGTAGCTGCTGTGGTCTCACAGCCAGCTAGCTCCTTGCTCTGCTGCTCTGGTACTGGTCACAGAGTGGCAGTGAGATAGGCATAGTAGCTTGTCTTTGTAAAGTGTAGCAAGAAGTGAGTCTTGCTGGGGCTCTTTAAGTTCCTCTGTGTCATTAAGATCACTGATCTCTGCTGGGCCTAGCAATGCGGCCTGAGTTAGTTGGCTGTATGCTGGCTGGCAGACTCTCACTTGGTGTTTGCCTGGCCCAGTCCTTGCTATTGCTTTTGTCTTTGAAGACTGAGCTTTAGGGACCAAGGGACTTTGACTGTTGAGTCACCAGGCGTATTCCTAACTGCATTAGATCCCAGGTCAGACTCTGATGTAGATCCGCTCACTCCCTCCCCACAGTGGAAGGATCGGACTTTGATGTGGATCCGCATACTCCCCACAGTGGGTGCATCTGTCCCTTCATCAGTTCCATTGCATTGTATGACCCTGCCCAGTGTCCTCAGATGCTAACATGGTCCATACTGGCTCCCACAGCCAGCTCTGGGCTCTGCTACACAAGCCTGCCCACTCTGACAAAGGACATACCCTCTTTGGAACCCTTACTCCTGGCCACAGTCCTCACTGCCCTCTTTTGCAG
Seq C2 exon
GCTATGAAGAGACCCTGACCCGCTTAGCTGCCATCCTCGCCAAACACTTTGCTGACCCTCGAATAGTAGGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033378:ENSRNOT00000043825:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGGATATCTACTGGTTACTGC
R:
CAGTGCCTACTATTCGAGGGT
Band lengths:
246-1102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]