DreINT0127514 @ danRer10
Intron Retention
Gene
ENSDARG00000031269 | rnf123
Description
ring finger protein 123 [Source:ZFIN;Acc:ZDB-GENE-050208-529]
Coordinates
chr22:34552311-34552638:-
Coord C1 exon
chr22:34552464-34552638
Coord A exon
chr22:34552386-34552463
Coord C2 exon
chr22:34552311-34552385
Length
78 bp
Sequences
Splice sites
5' ss Seq
CAGGTTCTC
5' ss Score
-0.02
3' ss Seq
TGTAGTGTTTCTGACTGCAGGTT
3' ss Score
7.06
Exon sequences
Seq C1 exon
AAGATGCTGGACGTGTACTGGCTCCTGCGAGTGTGTATTCAGACCATCGAGCATTCAGACGGCACCGGCTCTCTGTTCGCCTTCATGCCTGAGTTCTACCTCAACGTGGCCATGAACAGCTACAGCGCCCTCAAGAACTACTTCAGCCCCTCTAACTGCATGGAGGAACTGCCAG
Seq A exon
GTTCTCTCTCACTTACTGCCAGTGAGGGAAAAGAGTGTGTGTATGTGTGTGGCACTCATGTAGTGTTTCTGACTGCAG
Seq C2 exon
GTTATGAGGACACACTCATTCAGCTCGCAGCTATTCTCGCCAAACACTTCGCTGATCCTCGCATCGTCGGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000031269:ENSDART00000148147:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCATCGAGCATTCAGACGG
R:
TTTGGCGAGAATAGCTGCGAG
Band lengths:
178-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]