BtaINT0125545 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011588 | RNF123
Description
ring finger protein 123 [Source:HGNC Symbol;Acc:HGNC:21148]
Coordinates
chr22:51054914-51055421:-
Coord C1 exon
chr22:51055336-51055421
Coord A exon
chr22:51055257-51055335
Coord C2 exon
chr22:51054914-51055256
Length
79 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
GGCGCACCCTGCCGTTGCAGAGC
3' ss Score
6.18
Exon sequences
Seq C1 exon
CCCACCAGTGAGGAAGACCTCTGCCCCATCTGCTACGCTCACCCCATCTCTGCTGTGTTCCAGCCCTGTGGCCACAAGTCCTGCAA
Seq A exon
GTAAGTGGGCCCCTCGGGCGCGGGGGCGGGGGAGGTGGAAGGGGGCTACACCAGCCACTGGCGCACCCTGCCGTTGCAG
Seq C2 exon
AGCTTGCATTGACCAGCACCTGATGAACAATAAGGACTGCTTCTTCTGCAAAGCCACCATCGTGTCGGTGGAGGACTGGGACAAGGCCGCCCACGCAAGTGCCACTTCCTCGGCTGCCTAGGCCCGCCTCGCCCACACGCAGGAACCTCCACCCCTCAACTCAAAGCCAGGCTGGGCCCTGTTCATGAGCCCCTTGCCCCGTCCCCCTCCCCTCCCCATCCCACCTCCTCGCCTGTGTGAGCCTGTGTGAACCTCGTCAGCAGGGGCCCAGCCGTGCCCTATTTGTGCCTCAGCTTGATTTTCAGTCAGGGCCGCGGTGAGCATTAAATTATTATTCCATACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011588:ENSBTAT00000045376:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF042167=FdhE=FE(32.6=100),PF139201=zf-C3HC4_3=PU(51.0=86.2)
A:
NA
C2:
PF042167=FdhE=PD(25.6=53.7),PF139201=zf-C3HC4_3=PD(46.9=56.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCCACAAGTCCTGCAA
R:
TTGAGTTGAGGGGTGGAGGTT
Band lengths:
183-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]