RnoINT0127648 @ rn6
Intron Retention
Gene
ENSRNOG00000033378 | Rnf123
Description
ring finger protein 123 [Source:RGD Symbol;Acc:2301394]
Coordinates
chr8:116829050-116829519:-
Coord C1 exon
chr8:116829434-116829519
Coord A exon
chr8:116829355-116829433
Coord C2 exon
chr8:116829050-116829354
Length
79 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
TCCTCCCCTCCCCTCTGTAGAGC
3' ss Score
10.14
Exon sequences
Seq C1 exon
CCCACCAATGAGGAGGACCTCTGCCCAATCTGCTATGCCCACCCCATCTCTGCTGTGTTCCAGCCTTGTGGTCACAAATCCTGCAA
Seq A exon
GTAAGTGGGCCCCATGGAGACAAATAGGTGGGGAGGCATGTGAGGACACACGGTAGCACTCCTCCCCTCCCCTCTGTAG
Seq C2 exon
AGCCTGCATCAACCAGCATCTGATGAACAACAAGGACTGCTTCTTCTGCAAAGCCACCATTGTATCTGTAGAGGACTGGGACAAGGCAGCCAGCACAAGTGCCACATCCTCAGCTGCCTAGGCTGTCCTGGAAACCCACCATCAGACGCAGTCCGAGTCCTATTTATGAGCTCCCTTGGCCCTGTCCCCATCACCCTCGCTCTTACCACTCCCACCCATCTGCCTGTGTGTGCATAGCCTCACTGGTGGGAGGGAGCCTGAGTCCAGTCCAGGCCACAGTGAGCATTAAATTATTATTCCCTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033378:ENSRNOT00000043825:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF042167=FdhE=FE(25.7=100),PF139201=zf-C3HC4_3=PU(51.0=86.2)
A:
NA
C2:
PF042167=FdhE=PD(20.2=53.7),PF139201=zf-C3HC4_3=PD(46.9=56.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTTCCAGCCTTGTGGTC
R:
CGTCTGATGGTGGGTTTCCAG
Band lengths:
182-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]