MmuINT0135482 @ mm9
Intron Retention
Gene
ENSMUSG00000041528 | Rnf123
Description
ring finger protein 123 [Source:MGI Symbol;Acc:MGI:2148796]
Coordinates
chr9:107954171-107954451:-
Coord C1 exon
chr9:107954366-107954451
Coord A exon
chr9:107954292-107954365
Coord C2 exon
chr9:107954171-107954291
Length
74 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
CCTTCCCTCCCCTCTTGTAGAGC
3' ss Score
10.76
Exon sequences
Seq C1 exon
CCCACCAATGAAGAGGACCTCTGCCCAATCTGCTACGCCCACCCCATCTCTGCTGTGTTCCAGCCTTGTGGTCACAAATCCTGCAA
Seq A exon
GTAAGTGGGCCCCATGGACTTGGGGAGGCAAATTAGGACGCACGAGGTAGCACTCCTTCCCTCCCCTCTTGTAG
Seq C2 exon
AGCCTGCATCAACCAGCACCTGATGAACAACAAGGACTGCTTCTTCTGCAAAGCCACCATTGTATCTGTAGAGGACTGGGACAAGGCAGCCAACACAAGCGCCATGTCCTCAGCTGCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041528-Rnf123:NM_032543:37
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF042167=FdhE=FE(29.2=100),PF139201=zf-C3HC4_3=PU(51.0=86.2)
A:
NA
C2:
PF042167=FdhE=PD(21.9=51.2),PF139201=zf-C3HC4_3=PD(46.9=56.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAGGACCTCTGCCCAAT
R:
CTGCCTTGTCCCAGTCCTCTA
Band lengths:
167-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: