DreINT0127509 @ danRer10
Intron Retention
Gene
ENSDARG00000031269 | rnf123
Description
ring finger protein 123 [Source:ZFIN;Acc:ZDB-GENE-050208-529]
Coordinates
chr22:34375442-34378436:-
Coord C1 exon
chr22:34378351-34378436
Coord A exon
chr22:34375557-34378350
Coord C2 exon
chr22:34375442-34375556
Length
2794 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
CACTCTCTCTTTTATTCCAGGGC
3' ss Score
10.38
Exon sequences
Seq C1 exon
CCGACCAGCGAGGATGATCTCTGCCCGATCTGCTATGCACACTCCATATCAGCCATCTTCAAGCCCTGCTCCCACAAATCCTGCAA
Seq A exon
GTAAGTTGCTGCCAACATCCTCTTGACAGCTCTATCTTCCATTCATTGCTCCATTTAGGAGATTTACACCATGCTCTGAAACGCTTCAGTGGGAATTGCTAAAGCTCAAAGTTTATTCTATGTTTTTATGCATACATTACTGTACGAGCGTAGTTGAGCCCGCTGATTTTTAAAGTAATTTGTAAATAAATTAACTTAAAGTAGCTTTAAAAGTAATTTGATCCTTATAAAGTACCTGCTGGAGTTTTGTTTCCTTCCCAAAAATTTCCATTAATTGTTTTAAATAATATGGGTAATATACTCTCCCACATTGTTTTTTTGCTGTCTTCAGTAGATTGTTGGTCTTCATCAAATGGTGACACCTTCTGGATAAAGTAGCGCAAAACCATTTAAAAGTGCATGTCAGACGCAATTTGTCCAGACGGTTAAATAAAGTGTGCTGAGCTCATGAAGAGTTGATGATAAATTTCATGTCACAAAGATATGGTAGTCTAAAATGTGGGACCTTATAAGTAGTGGTAATACTTTAAAGCTGTTTAATCAATATATAGTATAAAAAATTAAATGGGAGAAGGGCTAAAGCCTGGTTTATACTTCTGCGTCAAGTGATCGGCGTGACCCACGGCACATGCAACGCACGTAGTTGTGCATTTATACTTCTGCGTGCTGTTTCTGTCGTTCTGCATTAACACTTCCGAAACGCTATTTGGCAGTTGGTGTTAATGTTCCTCTGTGTCGAGTTTCTTCGCTGGTGTTTTGTTCTTTCTGAACGCTTCCTTAATGTACAAGTGGCTCAAACTCGCTCATTTTGAGGCAGGAACCGGCAGACGTGCAACAACTTTAACTATAAGGTAAACACAAAACAAAACTTTCCATCCGGACCTCCTTCACGGGACTTGTACACTTGTAAACAATCGCTCTATCAGGCTCGCGCGGCTCTCGTCCCGCCCAGGCTCGTCAGCGCTACCAAGCCGACTGTAATGAAGTTTACGGCCCTTTGGCCGCCGGGAAGAAGGAGGCGGAGAACCGACGGAGTTTTAAAATGATTTATTAATAATAATGACGGCAGCTCCTCACGGAGACTGCCATTTAAATCAAAACAAACGGACGGCAGCTCCTCGCGGAGACTGCCGTCAAACTGAAAGCAAAAGTAAAATAACATGCCCGGGCCCGGTCCTCTCTCGGCTTCCTCTGCCATCGGTCCTCCTTTTATGGTCCAGAGCTCCTTCCGTGGGATCCGAGGCAGGTGCGCACCGCACGTGTATCCACTCACGCGGTGGCCTCACCCCGTTCCCACGGCTCTCGGCCACGCCCCCTCGCCACATACCCCCATCTCCCATCACAGGCCGGGGGCACCCCGTGGCTGTGCATACTCCGGGGGGGGGGTTTGGCGCCACAGCACCCGCGAGACCTATATGAGACGGGCCGAGAGAAAAGGAGATGGAAAAAAAAGGAGGAAAGACAGAGTCGACCGAGAAAGGGGAGAGAGGAAAAAAAAAATAAAAATTGGGGTTCGGTTCTCCAGACACGCTGCCACTCTCGGTCCTCCACCAGCTGAGAGATGCGACGACGTGCTGGGAGCCCTGTGGAGGAATCTATCCACCCGTCCGTCTTCTGGCGTCCGGCGGCGGTTCTCCTGGCTGGCTGGCGGCATTTCTGGTCTCCTGCTCCGCTCCTGCTTCGGTGGATGGATGCAGGCTTTGGCGTCATGGCGGATCGCGGCGACTCCCCCGGGTTCTGTGGGATGGCTCCCTTCAGCTCTTTCCCTTCCGGTGGTGAGCCCCGCGTCCCCTGCTCCTCCCCATGCTGGGAGACGGCAGCAGGCAAATCCTTTCCTCGCCAGCCTCAGGCCGCCCCGGCACTCTGGGCAGACGAACGGGTTTCTCCCCCACTCGGGTTAACTCCCGAACACTCGCCCCCTCTCTCAGCGGCGAGGGCATCTGGACAACGCGTCCCTCCTTCTCCCGGGTTTCGGCACCACTGTAATGAATTTACGGCCCTTTGGCCGCCGGGAAGAAGGAGGCGGAGAACCGACGGAGTTTTAAAATGATTTATTAATAATAATGACGGCAGCTCCTCACGGAGACTGCCATTTAAATCAAAACAAACGGACGGCAGCTCCTCGCGGAGACTGCCGTCAAACTGAAAGCAAAAGTAAAATAACATGCCCGGGCCCGGTCCTCTCTCGGCTTCCTCTGCCATCGGTCCTCCTTTTATGGTCCAGAGCTCCTTCCGTGGGATCCGAGGCAGGTGCGCACCGCACGTGTATCCACTCACGCGGTGGCCTCACCCCGTTCCCACGGCTCTCGGCCACGCCCCCTCGCCACACCGACCAATCACAGAGCTTGCGCTACACGTCGTTGTGATGTGTAGTTACATTTTTTGAGAGGTGCACGTCAGCGATGTCCACGGCGTAGGGCTATGCGTCAACACGTAGGCTGTGTCGAAGCATATGTGTGCGCTTGGCACAGAAGTATAAATCAGCCTTAAGGGGTAGAATTGAGACTGGCCCTAAGCAAACATCCATATAACTACAACAAATGCTTTCTCAACCGCTGTTTTCTCACTGCTGACATTTTTGTTCCTCATCTTTAACTGAGAAGAAAGATCGCAGGACATAGTTACGTATTCACTGACAAAAACTTGGCCACTTCTCTCAAAATCAAACCAGTTTCTTGCCAGTTTATCGCATGTGTGTTTTTCCCCTCATTCTAGTGAAGCGTGCCTAGGCTCTCTTTTAATGATTAAATGTCAGCGACGGACCGTCCCTCACTCACTCTCTCTTTTATTCCAG
Seq C2 exon
GGCCTGCATCAATCAGCACTTGATGAATAACAAGGACTGCTTCTTCTGCAAGGCCACCATAACTGGAGTGGATGATTACACCAAACCATTCGCCTCTTAGTATGCCCTACACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000031269:ENSDART00000148147:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.220 A=NA C2=0.041
Domain overlap (PFAM):
C1:
PF139201=zf-C3HC4_3=PU(51.0=86.2)
A:
NA
C2:
PF139201=zf-C3HC4_3=PD(46.9=67.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]