BtaINT0127300 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005980 | RREB1
Description
ras responsive element binding protein 1 [Source:HGNC Symbol;Acc:HGNC:10449]
Coordinates
chr23:47913940-47917727:-
Coord C1 exon
chr23:47917538-47917727
Coord A exon
chr23:47916709-47917537
Coord C2 exon
chr23:47913940-47916708
Length
829 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGC
5' ss Score
10.12
3' ss Seq
CTCTGCCGGCTTCCCCGCAGGCC
3' ss Score
11.04
Exon sequences
Seq C1 exon
GTGCGACGTCTGCTGCGTCACCTTTCGCACACACCGCGGCCTGCTGCGCCACAATGCACTGGTCCACAGGCAGCTCCCCAGGGACGCGCTGGGACGGCCTTTCATCCAGAACAACCCCGCCATCCCCGCCGGCTTCCACGACTTGGGCTTCACCGACTTCTCCTGTCGGAAGTTTCCCCGCATCTCTCAG
Seq A exon
GTACGCCATTGGCCAAGGCGGGACCCAGCTTCCCCACCCGAGGCAGGCTCTCCTTAAGACGCTGCCCTTTGGGCTCGGTCTGCCCCTCACAACCCTAGCTGAATTGAATCTGTATTGTTAACAGTGGTTCTTTAACATGCATATCACGGCTAAATATCTCTGGCATTGTAGTTTCTGTTCAAACGTTCTGGGTCATTGTTAACCTGAGCTGCATTCCTTCTCTGCTTATAAAATACCTGCCAAAGCTACTGTGGCGGTCACTCTTTGAAATTTTCAAAAATCGAGGTAAAAGATACCAACAGTGAAATTCTTCAGAAGCCCCAGGCTCAGTGTCTTATCCTGTATGTATACACTCATGTGCATGCGTCTGTGTGCACACACCCACATGTATACGCATGCATATATCCGCGTGTGTACCCACGTCTGTGCGCTCTTGTAGCCCCAGCCGCCACCCCCTCATTCTCCCTGGAGGCCCTTCTCAGGCGGTGCCTGTCGCCCACAGTCCGAGGAAGCCCAGTCTCCACTGATGGCAGGGAGTTACCATCATTTAGGTTTGTAGGGACCACGTTTTTAAAGAGAGAACCCAGCCTCTGTGGTGGTGGTACTTCATGGCACTTCCTGCCACTCTGCCCAGAGGCCCTGGAGACTGCCTCCCTCACTGGGCAGCTGGGGCTCCTAAGGCACTTTGTAGCTGGCGCTCCTTTCTCAGGCCGAGGGGTGTTTGCGGGCAGGGGAGGGTGGGCTCCCCTCGGGCTGGGATAAGGGCCTGGCCAGGCCTGCAGTGCAGCCGGGAGCAGTTGCTGACTCCTCTCTGCCGGCTTCCCCGCAG
Seq C2 exon
GCCTGGTGTGAAACGAACCTGCGCAGGTGCATCAGTGAGCAGCACCGCTTCGTCTGCGACACGTGCGACAAGGCCTTCCCCATGCTCTCCTCGCTCACCCTACACAAGCAGACGCACGTGGCTGCCAACCAGAGCCCGGACCGGCTGCAGGCCAGGGCCCCGCCGGGCGACGACCTGGACCAGAAGGTCTTCCTGGCGGTGCTGGGCCTGCAGCACGCAGAGGACGTGCGGCCTGCGCCGGCGGAGGAGCCGCCGCCAGACGACAACCAGGCGATCCAGCTCCAGGCACTGCGGTGCCAGCTACCTCAGGAGCCCGGCTGCGCCGGCCTGCTCAGCCTGGCGCCCTTCGACGCCGCTGCCCTGGGCGGGGCGCTTGCCGTCCTCCCGGCCGCCTCGGACAGCGTGAAGCACCTGGCCCTGCAGCCCTTCCAAGATGGCTTCATCATCCAGCCCGACAGCAGCATCGTGGAAAAGCCCATCTCCGGGGAGCCGGCCATCGAGCTAGCGGACATCCAGCAGATCCTGAAGATGGCTGCAGCCGCCTCTCAGAAGGTCGGCCTCCCGCCGCTGGCCAAGGCGCCCGCCGCGCCACTGCAGGCCGTCTTCAAGCACATGCCCCCTCTGAAGCCAAAGCCCCTGGCCGCGCCGCGCACGGTGGTGGCCACCTCCACGCCCCCGCCCCTGGTCAACACCCAGCAGGCCTCCCCCGGCTGCGTCAGCCCTAGCCTGCCCCCGCCGCCGCTGAAGCTCCTCAAGGGCACGGCGGAGGCGGCCCCTGGCGCCCACCTGCTGCCGCCCAAGTCGGGGGCGCAGCTCTTCCTGCAGCCGCCGCGCCTCGAGCTGCCTGGCCAGGCCGAGGTGAAGACGCAGCTGGAGCAGGACAGCCTCCTGGAGGCGCTGCTGCCGCTGAGCGTGGAGGCCAAGATCAAGCAGGAGATCGCGGAGGGGGACCTCAAGGCCATCGTGGCGGGCCCCGGCGGCAAGAAGGCGCCGGCCGTGCGCAAGGTGCTCTACCCCTGCCGCTTCTGCAGCCAGGTGTTCGCCTTCTCGGGCGTGCTGCGCGCGCACGTGCGCTCCCACCTGGGCATCTCGCCCTACCAGTGCAACATCTGCGACTACATTGCCGCCGACAAGGCCGCGCTTATCCGCCACCTGCGCACGCACAGTGGCGAGCGGCCCTACATCTGCAAGATCTGCCACTACCCCTTCACGGTCAAGGCCAACTGCGAACGGCACCTGCGCAAGAAGCACCTCAAGGCCACACGGAAGGACATCGAGAAGAACATCGAGTACGTGACGAGCAGCACGCCCGAGCTGGTGGACACTTTGTGCTCCCCCGAGACCGTGTGCCGGCTGTGTGGCGAGGACCTGAAGCACTACCGTGCGCTCCGCGTCCACATGCGCGCGCACTGCGGCCGCGGCCTGGGCGGCTGCCCCAAACCCCGCAAGCCCTTCGAGTGCAAGGAGTGCAGCGCTGCCTTCTCGGCCAAGCGCAACTGCATCCACCACGTGCTCAAGCAGCACCTGCACGTGCCCGAGCGCGACATCGAGAGCTACGTCCTGGCGGCCGACGGCCTGGGCCCCGCCAACACCCCCGCCGAGGCCCCGGGCCGCACCGACGAGGGCGAGCGCAAGCCCCTGGCCGCCTTCTTGGAGCCCCAGAACGGCTTTCTTCCCGCGGGCCCCGCCCAGCCTCTGCCCGCGCACGTTGCCGTCAAGGTGGAGCCCGCCAATAACCTCGCCACTGACTTCAACGAGCCCCTGGACTTCTCCCAGAAGGGCCTGGCCCTGATCCAAGTGAAGCAGGAGAACGCAGCTGCCTTCCTGAGCCCCTCCGCTCCCTACGATTGCTCCATGGAGCCCATCGACCTGTCTATCCCCAAGAACTTCCGGAGAGGAGACAAGGACTCGGCTGCTCCCGGGGAGGCCAAGAAGCCTGAGCAGGAACCTGGGAGCAGCGAGCAGGCCTCCCCAGGCCCACCAGCCTGCCCCACGCTGCCAGCGACCTTGGGCGCCAGCGGGCCCCTGGAGAAGCCGGGGGTCCCTGCCGCGGCATCTTCGGCGGCCAGCCCTCTGGAAGCCGCAGCGCTGCCCCTGCAGGGCCCCGTTCAACTCGCCGTGCCCCTCTATTCCTCAGCCCTAGTCAACAGCTCTCCGCTCTTGGGCAGCTCAACCCTCGGCAGCCCGGCCTTGCTGCGGCCGCTGCGCCCCAAGCCCCCCCTGCTCTTGCCAAAGCCCCCCGTGACAGAAGAGTTGCCCCCACTGGCCTCCATCGCCCAGATCATCTCATCTGTGTCCTCGGCCCCCACCTTGCTGAAGACCAAGGTGGCCGACCCGGGGCCGGGAGGAACCAGTGGTACTGCCGCGGCCTTAGATGGCATCGGGGGTGCCCTCCCCAAAGCCACCACCGACATCACCAGCCCGAAAGAATCCAGTGACTCACCCCCCTCCGCCAACAGCCCAGAGGCAGCCTCGCCCACCGAGCAGGGACCAGCCGGCTTGTCGAAGAAGAGGGGCCGGAAGAGGGGGGCGCGGAGCCGGGCGCGCAGCAGCGGCGGGGTGGACCTGGACTCCAGCGGGGAGTTCGCCAGTATCGAGAAGATGCTGGCCACCACGGACACCAACAAGTTCAGCCCATTCCTGCAGAGCGCAGAGGACGACGCCCAGGACGAGGTGGCCGCAGCCCCCGCAGACCACAACGGGCCCAGCGACGAGGAGCAGGGCAGCCCACCCGAGGACAGGCTGCTGAGGGCGAAGCGCAACTCATAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005980:ENSBTAT00000044565:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.434
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF139121=zf-C2H2_6=WD(100=2.8),PF134651=zf-H2C2_2=WD(100=2.7),PF134651=zf-H2C2_2=WD(100=2.8),PF134651=zf-H2C2_2=WD(100=3.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCACCGACTTCTCCTGTC
R:
CTCCTGAGGTAGCTGGCACC
Band lengths:
356-1185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]