RnoINT0129324 @ rn6
Intron Retention
Gene
ENSRNOG00000015701 | Rreb1
Description
ras responsive element binding protein 1 [Source:RGD Symbol;Acc:1310904]
Coordinates
chr17:27556057-27560381:-
Coord C1 exon
chr17:27560192-27560381
Coord A exon
chr17:27558974-27560191
Coord C2 exon
chr17:27556057-27558973
Length
1218 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TGCTTGCGGGTCCCACTTAGGCC
3' ss Score
4.77
Exon sequences
Seq C1 exon
ATGTGACATTTGCTGTGTCACCTTCCGCACACATCGAGGACTACTGCGTCACAATGCGCTTGTCCACAAGCAGCTTCCCAGAGATGCCATGGGAAGGCCTTTTATCCAGAACAATCCTTCCATTCCTGCTGGCTTCCATGACCTAGGGTTCACCGACTTCTCCTGTAGGAAGTTCCCTCGGATCTCTCAG
Seq A exon
GTATGTTCACAGACCTGTGCCGGGGACGGATGGGGGTTGTAATTAAATTCAGCCTAGCTCGTGGGTTTCTTGGGCAGAGGAATTAATGCTCTTTTATTTTAGCTGAGTTTCCGTGTGACTCTACCTCTCAGGTACCTTTTGCCCAGGCTTCAGGCTTGAGATTGAAAGCTGTGTATTTACTACTCCTCAAAACCCTGTCGTGATCTTTATTATCTGCGTCTCAGCTAGGTATTTGTAGCAGTTTCTGTTAAAATGGTTTGAATTTTTTTTAAGTGTGTGTGTGTGTGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGGAGAGAGAATGTATGTCATGCGTGTGGATGATGGTGGAGGCCAGAAAAGGGCATTGGATCCCCTAGAGCTGAAGTTGTAAGTGGTTGTGGTCCAATGTGGGTGCTAGGACCCACACTTAGGTCCTCTTTACTTCTGAGCTGTGTCTCCAGCCCCTTGGATCCTTGCGGATTTGAACAAAAAGTGAGCTGATTAGTTTCCTGCCCATACAGAAACTGCCAAAACTAGTGTTTAATTTTTCTATATATAAACTTGAGATAGGGAGTATCCACATATAAGTTCTTGATGCACCTGGTCTGAGGTGCAGTGGACTTGATGCATGTGTACATTCACAGCCGTCCCAGGTGATGGAAGTCCCCTCCCCCAGCCTCGGGGAAGCAGCCATTTTGTGAAGACCCCTGGTTTGTCTTCTTAGCTATTCTGGTACTGCTTAAGCTGGCAATCCTCCTGCCTCAGTCTGCCAGGTACTGGCAGTTCTCCCCAGTTCAACACTCCTCCGTTTCCAAGGCCTGGTTCAATTCCATCGTTATGTTATTTCACTCTGCTTGGGTACATCCTCGAGGGTGTCCTTGATCAGATAGGCAGGCTTCTTTGAGGTGTGCCTGGCCTTTTGACATCACTATCTACAGAGTTCACATTTGTGAACCGTGCAGCTGAGTAACAAAAGGAAAGTTACTGGTTTAAACCAGTTGACAATTTTGTGTTGGACTGCATCTGTGGCTGTCGGTGGCACCTGTGGCCTACAGGCTACAGGCCAGATGCCTGCTCTCTCCCTCACTTTCTTAATTCGGTCTCAGGTCTGCACTCAGAGGTTGCCTCTCTGTCAGTGGAAACAGCTCCTTCGTGGTCATGTCTAAATCCTCACCTTTCTCCCCTTGCTTTGCTTGCGGGTCCCACTTAG
Seq C2 exon
GCCTGGTGTGAAACAAACCTGCGTCGGTGCATCAGCGAGCAGCACCGCTTTGTGTGTGACACCTGCGACAAGGCGTTCCCCATGCTGTCGTCACTCATCCTGCATAGGCAGACCCACATCCCTGCCGATCAGGGACGGGAGAAGCTCCAGACTAAGACCCTGGCTGCTGATACCTTGGACCAGAAGGTCTTCCTGGCCTTCCTAGGCCTGCAGCACACCAAAGACGTGAAGCCTGCACCTGCTGAGGAGCTCCTGCCAGACGACAGCCATACAATACAGCTCCAGACACTCAAGTGTCAGCTACCTCAGGACCCTGGCTGCACCAATGTGCTGAGTCTGTCTCCTTTTGAAGCGGCTTCTTTAGGTGGTTCTCTAACAGTCCTCCCAGCCACAAAGGAGAATATGAAGCATCTGTCCCTGCAGCCCTTCCAGAAGGGCTTCATCATCCAGCCAGACAGTAGTATTGTGGTTAAGCCTATTTCAGGAGAGTCGGCCATTGAGCTGGCAGATATCCAGCAGATTCTAAAGATGGCAGCTTCTGCTCCTCCACAGATCAGTCTTCCGCCACTTTCCAAGGCTCCTGCCACCCCTCTGCAGGCAATTTTCAAGCACATGCCTCCCTTGAAGCCAAAGCCCTTGGTCGCACCCCGGACAGTGGTAGCTGCCTCCACACCCCCTCCTCTCATCAATGCACAGCAGGCATCCCCGGGTTGTATCAGCCCTAGCCTTCCGCCACAGTCCCTGAAGTTCCTCAAGGGGTCTGTGGAGGCAGTCTCCAGTGCCCATCTGCTACAGTCCAAGTCCGGGATCCAGCCAAACACCAGCACACAGCTCTTCCTGCAGCAGCCTGGGGTGGAGTTACCAGGCCAGGCCGAGATGAAAGCCCAGCTGGAGCAGGACAGCATCATTGAGGCCTTGCTGCCCCTAAACATGGAGGCGAAGATCAAGCAGGAGATAACAGAAGGTGACCTCAAGGCCATCATGACAGGCCCCAGTGGCAAGAAGACCCCCGCCATGCGCAAGGTGCTCTACCCCTGCCGCTTCTGTAACCAGGTGTTTGCCTTCTCTGGAGTCCTGCGAGCCCACGTCCGCTCCCACCTGGGCATCTCGCCCTACCAGTGCAACATCTGTGACTACATCGCCGCAGACAAAGCTGCTCTCATCCGCCACCTCCGCACGCACAGCGGGGAGCGGCCGTACATCTGCAAGATCTGCCACTACCCGTTCACCGTCAAAGCCAACTGTGAGCGGCACCTGCGCAAGAAGCACCTCAAGGCCACCAGGAAGGACATTGAGAAGAACATACAGTACGTGAGCAGCAGCACGGCTGAGCTGGTGGATGCCCTCTGCTCCCCGGAGACCGTGTGCAGGCTGTGCGGTGAGGATCTGAAGCACTACCGCGCCCTGCGCATTCACATGCGCACGCACTGCAGCCGTGGCCTGGGTGGCTGCCACAAAGGCCGGAAACCCTTCGAGTGCAAGGAATGCAACGCCGCCTTCGCGGCCAAGCGCAACTGCATCCACCACATCCTCAAGCAGCACCTGCACGTGCCCGAGAAAGACATTGAGAGCTACGTGCTGGCCACCGACGCCGGCCTTGGCCCCGCAGACACGGCCGCAGAGGCCTCTTCCAGAGAAGAGAGCAGCTGTGTCACTTTCGCCGAGTGCAAGCCCCTCACCACTTTCCTGGAGCCCCAAAATGGCTTTCTTCACTCGAGCCCCACCCAGCCCCTGCCTTCCCACATCTCTGTCAAGTTGGAGCCGGCCAGCAGCTTTGCAACAGACTTCAACGAACCCCTTGACTTTTCGCAGAAAGGCCTGGCACTGGTCCAAGTGAAGCAGGAAAATATGTCCTCCTTGCTGAATTCTTCCTCCTCCTCTGCCCTCTATGACTGCTCCATGGAGCCCATTGATCTGTCCATCCCCAAGAGCGGAAAGAGAGGAGACAAGGACACAGTTGTTTCCAGCGACGCCAAGAAACCAGAACCAGAAGCTGGGAAAGCTGAGCAGCTCTCTCCCCATCCGCCACCCTGCCCTACCTTGTCAGTGACTGTGGAGCCCAAAGGGAGCCTGGACAACCCAGCAGGCACTGTGGTGGCCGTCACCACGGCTGCCAAGCTGGAGCCCCACACCCAGCCCCTCCAGGGCTCTGTGCAGCTGGCTGTCCCCATCTACTCCTCAGCTCTCATCAGCAATGCTCCCCTCTTGGGCAGCTCCGCCCTCCTGAACAGCGCGTCCTTGCTTCGGCCCTTACGGCCAAAGCCTCCCCTCCTCTTGCCAAAGCCCGCGATGACAGAGGAGCTGCCGCCACTGGCCTCCATTGCGCAGATCATCTCCTCTGTGTCCTCGGCTCCTACTCTGCTGAAAACGAAGGCAGCTGACCCCGGGCCGTCGAGCACCAGCAGTAACGCTGTGGCCACAGACAGCCCAGGAGGCTCCATCCCCAAGGCCTCCCCTAGCCCCACAGACATCCCAAGCTCGAGAGAACCCACTGACCCAGCCCCTACAGCCAGCAGCCCCGAGGAAGCCTCGCCTCCTGAACAAGGGCCGGCTGCCTCATCCAGGAAGAGGGGCAGGAAAAGGGGAATGAGAAACCGACCCCTCCCCAACAGCAGTGCTGTGGACCTGGACTCCAGTGGGGAGTTTGCCAGCATCGAGAAGATGCTGGCCACCACAGACACCAACAAGTTCAGTCCGTTCCTGCAGACGGCAGAGGACACTCAGGAAGAGGTGGCTGGAACCCCTGCAGACCACCGCGGGCCCACTGAGGAGGAGCAAGGCAGCTCTGCGGAGGACAGGCTGCTGAGAGCAAAGCGGAACTCCTATGCCAACTGCCTGCAGAAGATCAACTGTCCCCACTGTCCCCGGGTCTTCCCTTGGGCCAGCTCCCTGCAGAGGCACATGCTTACACACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015701:ENSRNOT00000060218:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=NA C2=0.356
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF139121=zf-C2H2_6=WD(100=2.7),PF134651=zf-H2C2_2=WD(100=2.6),PF134651=zf-H2C2_2=WD(100=2.7),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=PU(38.5=1.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTTCCCAGAGATGCCATG
R:
AGGCTTCACGTCTTTGGTGTG
Band lengths:
354-1572
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]