DreINT0129321 @ danRer10

Intron Retention

Gene

ENSDARG00000042652 | rreb1b

Description

ras responsive element binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-070912-273]

Coordinates

chr2:21395086-21397940:+

Coord C1 exon

chr2:21395086-21395275

Coord A exon

chr2:21395276-21395359

Coord C2 exon

chr2:21395360-21397940

Length

84 bp

Sequences

Splice sites

5' ss Seq

CAGGTAAGC

5' ss Score

9.88

3' ss Seq

GATTGTTTAATTTCTTTAAGGTC

3' ss Score

8.07

Exon sequences

Seq C1 exon

GTGCAACATTTGTTGCATTACCTTTCGCAAACACCGTGGTCTCCTGCGTCATAATGCTGCCATTCATAAACAGCTTCCAACTGACCCCTCTGGGCGACCTTTTATACAGAACAACCCCTCCATCCCACTGGGATTTGGCGATTTAGCTTTCATCGACTTCAGCTGTCAAAAGTTTCCACAAATTGCACAG

Seq A exon

GTAAGCATAAGATGAGAAATATTTACTGTATCTGTTTTTTTTTATGATGACTAAAGGTAATTTTGATTGTTTAATTTCTTTAAG

Seq C2 exon

GTCTGGTGTGAGACTAACCTGCGCCGATGCTCTAGCAAGTTCCATAAGTTTGTTTGTGAGGACTGCAACAAGGCCTTCCCTATTCAGCAATCTCTGGATCTTCACAAGTCTTCACATAACTGTAGTGTAGACACCAGCACTGATCCTCAGGAACATAAAGCAGATGCTGTTATAGACGCCCCAAAAGTAAACTCCCATTCCGAGGATTCCAAGGAGGTCAGTGAACTAGCACCACACGTTGACACTACTAGTTCAGATGGGAAGAATGGTTTCATGGAGCGCCTGGGTCTCCAGCACTCCTCCTTGGCCAAGCTAGAGAAATCAGAAGAGCAGATTCAGCAGGAGGTTTTAGACAGCATTCGATTCATTCGCGTTGAGCCACCATCAACAAATCTACCTCAAGAAACCAGCGGCAGTCTTGGTGTCTCAATCCTTGAGCCTGTCTCTCTTCAAGCAATGAACAAGAACACAGCCCTTGGCCTTCTATCGCTACAGCCACTACATGCTGTGGTCAGTAATGGCATGTTTGTCCCAATAAGCGGTCAAACCGCTGTAGAGCTGGCGGATATTGAACAAATCCTTAAAATCGCAACCTCTGTACCACCTCAGATGTCTTTGTCTATGCTTCCCAAAAGTCTGGGTAGTCCTCTTCAAGTGGACCCCAGACAGATTTCTTCTTTAAAACCCAAGTCCTTAATCACTCCCCGATCCAGCATGGGTGCCTCCACACCACCTCCACCTGTCATGAATGCCCAACAGGCCTCATCCGGCAACATCAGTCCTAGCCTTCCACCCCAAACAGGCCAACAAGTGAGAACTGCCAGACAGTCTTCAGCCTCATCCTCATCCTCAACTTCCTCCTCTCCCACCAATTGGGAAACTACTCAACTGGGATCTGATGTCATAGGAAACACGATTATCTCATATGAAACTGGAAAGCAGGAAGAGTTTGACAGCAAAGAGAAGGACATGAGAGTTGTCCCCAAAAAGACAGCTAAGACTGAATACCCTTGTCGGTTCTGCAAAGAAGTATTCTCTTTCTTAGGTGGCCTCCAGGCACATATGCGTCACCATTTGGGAGCATCCCCATATCAGTGCACCATTTGTAGCTACGCTGCTCCTGACAAAGCGACACTGATTCGACATCTCAGAACACACAGTGGTGAGCGGCCATACGTCTGTCGCCTCTGTCACTACCCTTTCACTGTGAAAGCCAACTGCGAGCGCCATTTGCGCAAGAAGCACATGAAGAACACACGCAAGGACATCGAGAAAAACATTGAATATGTAACCACCTCCTCGAGCATAAGCAGTGTAATTGGAGGCACCACACTAGACCTCCTTGATACAACCAACGCTGGCAACACATCTTGTCGATATTGTGGGGAGGACCTTAAGAACTACCGGGCCCTTCAGATTCACCTGCGAACTCACAATGGATGTCAAAAGAAACCATTTGAGTGCAGGCAATGTGGGGCGACATTTCTCGCTAAAAGGAACTGTATTCACCATTTGCTGAAACACCACCCAGATGTGCCAGAAAGGGAAATTGAGGAGCACATCAAAAGTCTTGTACCAGTTGGAGGTGAAGTCAATGCTCAATCCAACACTTCAGCCACAAATGGGCTTGTTAACAGCTCCATTTCCCAGAATGTAGGTACCTTCTCTGGACCTGTTGAGGAGCAGGAACAACCTTTGGATTTCTCTAGCAAATCTCAGAAAACAATGCCTTCAGTCGTTAAAATTGAAGGAGCAGCATCTCCTCTGTTAAATGACTGTTCTATGGAGCCCATTGACCTCTCAATACCCAAGGATCCAGAGAAGAAGAAAATGAGGAAAGAAGTTCCCCAGAATTATCAAGAGCTCAATAAAGAAAAGACTTCAGAAACAGCCCCTGGACTTCTCGCAGCTATTCCGGTCTCCATTCCTAGCCTAGCCTCAGTTCTATCCAGTGACATTACTAAGCCTTATACTCGCTTAAAGCCCCTGCTACCAAAACCATCTTCTGCTTCTAGTACTGCGGAAATGGCACCACTGGCCTCTATTGCTCAGATTATCTCATCTGTTTCAGCTACCCCAGTGCTTATCGAAACAGGAATGGATGCAAAAAACTGTATTAGTGCAGTGGATTTTAAAACACTAAGTGAAAACAAGAGTCCCATAGGCACCACTAAACTGGATTCCGTGCTGAATGGGTCTCCTGATAACTCAAAGAAAAGAGGCAAGAAGAGAGTGTTTCAGGAGGAGATCTGTGATTCGAGAATAGCTGTGGGCAGTGGGATTGACCTGGAGTCAAGTGGCGAGTTTCCCAGTGTAGAGAAAATGTTGGCTACTACTGATGCAAATAAGTTCAGTCCCTACCTGCAACCCAATCAGATGGAGCCAATGATGGAGGAAAAAGAGAAGCAGTCAGCTGACGAGGAGGTGAAGGAAATACGAGAAGACAAACCAAAGAAACCTCCACAGAACAAAGGAAAGAAAAATGCTTATTCCAATTCAGTGCAGAAAATGACCTGCCCCTACTGCCCTCGATTGTTCCCGTGGGCCAGCTCATTGCAAAGGCATATGCTAACACACACAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSDARG00000042652:ENSDART00000062563:9

Average complexity

IR

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.250 A=NA C2=0.460

Domain overlap (PFAM):

C1:

NO

A:

NA

C2:

PF0009621=zf-C2H2=WD(100=2.7),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=PU(38.5=1.2)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSDARP00000129088