HsaINT0143338 @ hg38
Intron Retention
Gene
ENSG00000124782 | RREB1
Description
ras responsive element binding protein 1 [Source:HGNC Symbol;Acc:HGNC:10449]
Coordinates
chr6:7226467-7231907:+
Coord C1 exon
chr6:7226467-7226656
Coord A exon
chr6:7226657-7228996
Coord C2 exon
chr6:7228997-7231907
Length
2340 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTC
5' ss Score
6.49
3' ss Seq
TACCGGTGGGTTCTATATAGGCC
3' ss Score
5.73
Exon sequences
Seq C1 exon
ATGTGACATTTGTTGTGTCACCTTTCGAACACATCGAGGACTGCTGCGTCACAACGCGCTTGTCCACAAACAACTTCCCAGGGATGCAATGGGCAGACCTTTCATACAGAACAACCCTTCAATTCCTGCTGGCTTCCACGACTTAGGATTCACGGACTTCTCCTGTAGGAAGTTTCCTCGCATTTCTCAG
Seq A exon
GTATTCTGATCAGCCCATGGAAGCAACCAGCAACTGCCTTCCATGGTCCACACAGTTAGACCATGGGAACTTCCTCTCCTCAGGGTTTCTTTCCTTAAAATGTCGGTTGGGCTTTGTCTTTTTTTGTAACACCTTTTTTCTTAAAATTATTGTTGGCCCTTTCGGTCTCCCTTGGGTTGTTGGGTTGAGAAGGCTGCATAGGCTTGTTTGGGGTTGAATATCCTATGAACTGTGCATCAGTCTAGCTCTTCTGTGCCTTTTGTCCGTTCTTGGGTCTTTGAGGTTTAAGTTGTCAGTTGTAGACCAGGCCCCAGTGGCTCACACCTGTAACGCCAGCACTTTGTGAGGCCAAGGCAGGAAGATCATTTGAGGTCAGGAGGTTGAGACCTGCCTGGACAGCACAGCAAGACTTTATCTCTACAAAAAATTTAAAAATTAGCCAGGCGTGGTGGTGTGCACCTAGTAGTCCCAGCTACTTGGGAGGCTGAGGTGGGAGGATCACTTGAGCCCAGGAGGTTGAGGCTGCATTGAGCCATGATCGTGCCACTGCACTCCAGCGTGGGTGGCAGAGAGAGATTGCCTCAAAAATAAAATAAAATTTTAGGGCCGGGCGTGGTGGCTCATGCCTCTAATCCCAGAACTTTGGGAGGCCAAGGCAGTCGGATCATGAGGTCAGGAGTTCAAGACCAGCCTGACCAACATGGTGAAACCCTGTCTACACTAAAAATACAAAAATTAGCCAGGCGTGGTAGCATGCACCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGAAGAATCGCTTGAACCCGGGAGGCTGAGGTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTAAGAAAAAAAAAATTTTTTTTTTAAATAAAATAAAAGTGGTGAATTGTAAAACACCCCAGTCCTATGATAATCGGAATTCGTGGGATTTTAAAAAAAAATCTTTCTTTACTATCTGCATTGCAGCTAAATATTCCAGCGTTGTGGTTTCTATTAAAAACAATTTGGGTCATTATTGACCTGAATAAGAAAAGAGCCATATATATTCACTGCTAATAAAGCACCTGCTAAAACTACTTTGAAACTGGCTGGGCACAATGGCTCATACCTGTAACTCCAGCACTTTGGGAGGCCAAGGCAAGTGGAACACTTGAGGCCAGGAGTTCAAGACCAGCCTGGCCAACACAGTGAAACCCCGTCTCTACTAAAAGTATAAAAAATTAGCTGGGCATAGTGGCACATGCCTATAATCCCAGCTGCTGGGGAGGCTGAGGCATGACAATCTCTTGAACCCGGGAGGTGGAGGTCGCAGTGAACCCAGATCATGCCTGGGTGACAGAGCGAGACTCAGTCTCAAAAATAAATAAATAAAACTAAAACTGCCTTGAAATTATTTTTTTCCCCATTTTAAAAAGTTGAGATAGAAGGTATCAACAGTGTTGTTGTTCAAGTGTACAAGGTACAAACTCAATGGATTGTTCCATATACACACACCCATGTGTGTGCACCCCCCAGGAGACATTCCTCATAGACCCTCCTAGGCAGCATCCCCCTTCCACAATCATAGAGGGGTAGGGTAGCTGATTCTCCAACATCTCTGGACCTCAGTTTTGCAAGGCACCCACTTTTACAAAGAGAATTAATTCTACCCTTGTGGTATTGTTACTTAACTATACTTCAGAATCTCTAGTGAGATACCCTGTGGGTTGATATCAGTTATCACGCAAACATGATTCTTAAGATGCTTTGTGGATTTCCTTATTCAGTCCAGTGTGTTAGCAAGCAGGAGAAGGTCAACTTTTTTTTTTTTTTTTTTTTTTTTTTAAGGCAGAGTCTTGTTCTGTTGCCCAGGCTAAAGTGCAGTGTGGCATAATCATGTGTCACTTCAGACTCAACCTCCTTAAGCTCAGGTGCTTTTCCTGCCTTAGCCTCCCAATAGCTAGGACACAGGCATGTACCACCACATCTGGCTAATTTTCTTATTTTTTTTTATAGAGACAAGGTCTTGCTATGTTGCCCAGGCTAGTCACAAACTCCTGGCCTCAAGTGATCCTCCCGCCTCAGTCTCTGGAGTAGCTGGGACTAGAGGCATGAGCCAACACACCTGGCTAATTTTTTTTTATTTTTTGTAGAGATACGGGATCTTGCTATATTGCCCAGGCTGGGAACTCTTTATGTTATGGGGAAAGGCTGTGTACTGGGATAAATGTACAACAAATACTTTGTGCATCTCCGTTTAGTGATTATTTTTTCAATCTTCACATGTGTTCCCTTGCTTTTACCGGTGGGTTCTATATAG
Seq C2 exon
GCCTGGTGCGAAACAAACCTGCGGAGGTGCATCAGCGAGCAACACCGTTTTGTCTGCGACACCTGTGACAAGGCGTTCCCCATGCTCTGCTCACTGGCTCTGCACAAGCAGACCCATGTGGCGGCAGACCAGGGTCAAGAAAAGCCGCAGGCCACGCCCCTGCCTGGTGACGCCCTGGACCAGAAGGGCTTCCTGGCCTTGCTTGGCCTGCAGCACACCAAAGACGTCAGGCCTGCCCCCGCCGAGGAGCCCCTGCCGGATGACAACCAGGCAATTCAGCTCCAGACACTCAAGTGTCAGCTACCTCAGGACCCCGGCTGCACCAACCTGCTGAGCCTGTCACCTTTCGAAGCTGCTTCCCTAGGCGGTTCTCTCACAGTTCTCCCCGCGACCAAGGACAGCATAAAGCACCTGTCCCTGCAGCCCTTCCAGAAGGGCTTCATCATCCAGCCTGACAGCAGCATTGTGGTCAAGCCCATCTCTGGCGAGTCGGCCATCGAGCTGGCAGACATCCAGCAAATTCTGAAGATGGCAGCCTCGGCTCCCCCTCAGATCAGTCTTCCGCCCTTCTCCAAGGCCCCTGCCGCCCCACTGCAGGCGATCTTCAAGCACATGCCCCCTCTGAAGCCAAAGCCCCTGGTCACACCACGGACGGTGGTGGCCACCTCCACGCCCCCGCCTCTCATCAACGCCCAGCAGGCTTCCCCGGGCTGTATCAGCCCCAGCCTGCCGCCACCGCCCCTGAAGCTCCTCAAAGGCTCAGTGGAGGCGGCCTCCAACGCCCACCTGCTGCAGTCCAAGTCCGGGACCCAGCCCCACGCGGCCACGCGGCTCTCCCTGCAGCAGCCGCGGGCGGAGCTGCCGGGCCAGCCTGAGATGAAGACGCAGCTGGAGCAGGACAGCATCATCGAGGCCCTGCTGCCGCTGAGCATGGAGGCCAAGATCAAGCAGGAGATCACAGAGGGGGAACTCAAGGCCTTCATGACAGCGCCCGGCGGCAAGAAGACGCCCGCCATGCGCAAGGTGCTCTACCCCTGCCGCTTCTGCAACCAGGTGTTTGCCTTCTCGGGGGTCTTGCGTGCCCACGTGCGCTCCCACCTGGGCATCTCGCCATACCAGTGCAACATCTGCGACTACATCGCCGCCGACAAGGCCGCGCTCATCCGCCACCTGCGCACGCACAGTGGGGAGCGGCCCTACATTTGCAAGATCTGCCACTACCCCTTCACTGTCAAAGCCAACTGCGAGCGGCACCTGCGCAAGAAGCACCTCAAGGCCACCCGCAAGGATATCGAGAAGAACATCGAGTATGTGAGTAGCAGCGCGGCCGAGCTGGTGGACGCCTTCTGCGCCCCGGACACCGTGTGCCGGCTGTGCGGCGAGGACCTCAAGCACTATCGTGCCCTGCGCATCCACATGCGCACGCACTGCGGCCGCGGCCTGGGCGGGGGCCACAAGGGCCGCAAGCCCTTCGAGTGCAAGGAGTGCAGCGCCGCGTTCGCGGCCAAGCGCAACTGCATCCACCACATCCTCAAGCAGCACCTGCACGTGCCCGAGCAGGACATCGAGAGCTACGTGCTGGCCGCCGACGGCCTGGGCCCCGCAGAGGCGCCGGCCGCTGAGGCGTCGGGGCGCGGGGAGGACAGTGGCTGCGCTGCCCTTGGTGACTGCAAGCCCCTCACTGCCTTCCTGGAACCCCAGAACGGCTTTCTTCACAGGGGCCCCACCCAGCCTCCACCTCCCCATGTCTCGATCAAGTTGGAGCCCGCCAGTAGCTTTGCGGTGGACTTCAATGAGCCCCTGGACTTCTCGCAGAAGGGCCTGGCCCTGGTCCAAGTGAAGCAGGAAAACATCTCCTTTCTGAGCCCTTCTTCCCTGGTCCCCTATGACTGCTCCATGGAGCCCATCGACCTGTCCATCCCCAAGAACTTCAGGAAAGGGGACAAGGATTTGGCCACTCCCAGCGAAGCCAAGAAGCCTGAGGAGGAGGCGGGGAGCAGCGAGCAGCCCTCTCCCTGCCCAGCACCCGGCCCTTCTCTTCCTGTAACTTTGGGGCCCAGCGGAATCCTGGAAAGCCCCATGGCCCCTGCTCCGGCGGCCACCCCGGAACCCCCAGCACAGCCCCTGCAGGGCCCTGTTCAGCTGGCGGTCCCAATCTACTCCTCAGCCCTGGTCAGCAGCCCTCCACTCGTGGGCAGCTCAGCCCTCCTGAGTGGCACAGCCTTGCTGCGTCCACTGCGGCCCAAGCCCCCGCTGCTTTTGCCAAAGCCCCCCGTGACAGAAGAGCTGCCCCCGCTGGCCTCCATTGCCCAGATCATCTCATCTGTATCCTCGGCCCCCACCCTGCTGAAAACCAAGGTGGCGGACCCAGGGCCCGCAAGCACTGGCAGTAACACCACGGCTTCAGACAGCTTAGGAGGTTCTGTCCCCAAAGCCGCCACCACCGCCACCCCCGCTGCCACCACCAGCCCAAAAGAGTCTAGTGAGCCTCCCGCTCCAGCCAGCAGCCCAGAGGCTGCCTCTCCCACCGAGCAGGGCCCAGCGGGCACGTCGAAGAAGAGGGGCCGGAAAAGGGGGATGAGGAGCCGACCCCGCGCCAACAGCGGCGGGGTGGACCTGGACTCCAGCGGGGAGTTTGCCAGCATCGAGAAGATGCTGGCCACCACAGACACCAACAAGTTCAGTCCGTTTCTGCAGACAGCGGAGGACAACACTCAGGATGAGGTGGCCGGAGCCCCTGCCGACCACCATGGGCCCAGTGATGAAGAGCAGGGCAGTCCCCCAGAAGACAAGCTGCTGAGGGCCAAGCGGAACTCGTACACCAACTGCCTGCAGAAGATCACCTGTCCCCACTGTCCCCGGGTTTTCCCTTGGGCCAGCTCCCTACAGAGGCACATGCTCACACACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124782:ENST00000379938:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=NA C2=0.427
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=2.6),PF134651=zf-H2C2_2=WD(100=2.7),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=PU(38.5=1.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development