MmuINT0137354 @ mm10
Intron Retention
Gene
ENSMUSG00000039087 | Rreb1
Description
ras responsive element binding protein 1 [Source:MGI Symbol;Acc:MGI:2443664]
Coordinates
chr13:37928123-37935545:+
Coord C1 exon
chr13:37928123-37928312
Coord A exon
chr13:37928313-37929557
Coord C2 exon
chr13:37929558-37935545
Length
1245 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TGCTTGTGGGTCCCACTTAGGCC
3' ss Score
5.3
Exon sequences
Seq C1 exon
ATGTGACATTTGCTGCGTCACCTTCCGCACACATCGAGGACTGCTGCGCCACAATGCACTTGTCCACAAGCAGCTTCCCAGAGATGCCATGGGAAGACCTTTTATCCAGAACAACCCTTCGATTCCTGCTGGCTTCCATGATTTAGGGTTTACTGACTTCTCCTGTAGGAAGTTTCCTCGAATCTCTCAG
Seq A exon
GTATGGTGCTAGACCTAGTCAGCCAGGATGGGAGTTGGGGTGTTGTTTTTGTATAATACCATTTCACTAAAATTCAGCCTGGCTCTTGGGTTTCTTGGGCTAAGGAGTTGATGGTCTTTTATTTTAGTTGAGTTTTCATGTGAATCTACCTCATCAGGACCTTTTGCCCATACTTCACGCTTTGAGATTGAAAGTTGAGTACTTACTACTCCTGTCACTACTACCCTGTTATAATATTTAGTACATAGATCACAACTAGGTATTTGTAGCAGTTTCTGTTAAAATGGTTTGGATTTTTTTCAAATCCAAGTGTGTGTGTGGGGGGGGGGGGGGGGATGGATGATTGTGAAGGCCAGAAAAGGGCATTGGATCCCTAGAGCTGAAGTTGTAAAGTGGTTGTGGTCAGATATAGGTGCTGGAAACCACACTTAGGCTCTCCTAACTACTGACCTGTGTCTGCAGCTCCTTGGACCTTTACGAATTTGAACAACTAATGCACTGATTAGTTCCCTGCCTATGCAAAAACTACCAGAACTACTTTTTAGTATTCTCAGGTGTAAATTTGAGATAGGAAGTATCCACATATAAGTTCTTGACATAAATAAGTCTCAAGTGCAGTGGACTTGATACATCTGTACATGCACAGCTGTCCCAGGAGATTGATCCCTCCTCCCCCAGTCATGGAAGCAGCCATTTTGTGAAGAAGGCATCCTAGTTTGTCCTCTTAGCTTGTTTGGTACTGCTTGAGCTGGCAATCCTCCTGCCTCAGTCTGCTGGGTGCTGGCTTGTGCTGTGTCCCCCAGTGTCAGCACTCCCCCATTTCCAAAGGCTTACTTCAAATTCCATCATGATGTTATTTCACTCTGCTTGTGTCTATCCTAGAGGGTGTCCTTGAGCAAACAAGCAGGTTTCTTTCAGGTGTGCCCAACCTTTGACACTGCTAGCTACTGAGCTCACCCTTGTGAACTGTGCAGTTGAGTGACAGGAGAAAAGTATCTCTTCATAGTTTAAGCCACTTTACAGTTTGGTGTTGGAGTACATCCATGGCTGTCCTTAGCCTGCTGTAGGCCAGGGCCGCCCTCCCTCGCTTTTCCCGAATTCAGTCTCAGATCTGCACTCCGAAAAGTTGACTCTGTGTTAATGGAAGCGGCTGCTGCTAACAGCAGGCACCTCTCACATCTCCTTCACGGTCGTGTTTCAATCCTCACCTTTCTTCCCTTGCTTTTGCTTGTGGGTCCCACTTAG
Seq C2 exon
GCCTGGTGTGAGACAAACCTACGGCGGTGCATCAGCGAGCAGCACCGGTTTGTGTGTGACACCTGCGACAAGGCGTTCCCCATGCTGTCGTCACTCATCCTGCACAGGCAGAGCCACATCCCTGCCGATCAGGGACGGGAGAAGCTCCAGACCAAGACCCTGGCTGCCGAGTCCTTGGAACAGAAGGCCTTCCTGGCCTTGCTGGGCCTGCAGCACACCAAAGACGTCAAGCCTGCCCCGGCGGAGGAGCTCCTGCCGGACGACAACCAAGCAATACAGCTCCAGACACTTAAGTACCAGCTACCTCAGGAGCCTGGCTGCCCCACCGTGCTGAGTGTGTCTCCTCTTGACGCTGCTTCTTTAGGTGGCTCTCTGACAGTCCTCCCAGCTACCAAGGAGAATATGAAGCATCTGTCCCTGCAGCCCTTCCAGAAGGGCTTCATCATCCAGCCAGACAGTAGCATTGTGGTTAAGCCTATTTCAGGAGAGTCGGCCATTGAGCTGGCAGATATCCAACAGATTCTAAAGATGGCAGCTTCCGCTCCTCCGCAGATCAGTCTTCCGCCACTTTCCAAGGCCCCTGCCACCCCGCTGCAGGCGATTTTCAAGCACATGCCTCCTTTGAAGCCAAAGCCCTTGGTCACACCCCGGACAGTGGTAGCCGCCTCCACGCCCCCACCTCTCATCAACGCCCAGCAGGCATCTCCCGGTTGTATCAGCCCCAGCCTTCCTCCACAGTCCCTGAAGTTCCTCAAGGGGTCGGTGGAGGCAGTGTCCAATGTTCATCTGCTTCAGTCCAAGTCTGGGATCCAGCCAAGCACCACCACACAGCTCTTCCTGCAGCAAGCTGGAGTGGAGTTGCCGGGCCAGCCCGAGATGAAGACACAGCTGGAACAAGAGAGTATCATTGAGGCCCTGCTGCCCCTCAACATGGAGGCGAAGATCAAGCAGGAGATAACAGAAGGTGACCTCAAGGCCATCATGACAGGCCCCAGTGGCAAGAAGACCCCCGCCATGCGCAAGGTGCTCTACCCCTGCCGCTTTTGCAACCAGGTGTTTGCTTTCTCTGGAGTCCTGCGAGCCCACGTTCGCTCCCACCTGGGCATCTCACCCTACCAATGCAACATCTGTGACTATATTGCTGCAGACAAAGCCGCCCTGATCCGTCACATCCGCACACACAGCGGGGAACGGCCTTACATCTGCAAGATCTGCCACTACCCATTCACGGTCAAAGCCAACTGTGAGCGGCACCTGCGCAAGAAGCACCTCAAGGCCACCAGGAAGGACATTGAGAAGAACATAGAGTACGTGAGCAGCCCCACCGCAGAGCTGGTGGACGCCTTCTGCGCCCCAGAGACCGTGTGCAGACTGTGCGGGGAGGATCTGAAGCACTACCGAGCTCTACGCATCCACATGCGCACACACTGCAGCCGGGGCCTGGGCGGCTGCCACAAAGGCCGGAAACCCTTCGAGTGCAAGGAATGCAACGCTCCCTTCGTGGCCAAGCGCAACTGCATCCATCACATCCTCAAGCAGCACCTGCACGTGCCCGAGAAGGACATCGAGAGCTACGTGCTTGCCACCAACAGTGGCCTCGGCCCCGCGGACACGCCCACGGATGCCGCTTCCAGAGGAGAAGAGGGCAGCTGTGTCACTTTCGCGGAGTGCAAGCCCCTCGCCACTTTCCTGGAGCCCCAAAATGGCTTTCTTCACTCGAGCCCCACCCAGCCCCTGCCTTCCCACATCTCTGTCAAGCTGGAGCCAGCCAGCAGCTTTGCCATGGACTTCAACGAACCCCTTGACTTTTCGCAGAAAGGCCTGGCACTGGTCCAAGTGAAGCAGGAAAATGTTTCCTCCTTGCTGACGTCTTCCTCCTCCTCTGCCCTCTATGACTGCTCCATGGAGCCCATTGACCTGTCCATCCCCAAGAGCGTCAAGAAAGGAGACAAGGACACAGTTGTTCCCAGTGACGCCAAGAAACCGGAACCGGAAGCTGGGCAAGCCGAGCCGCTCTCACCCCGCCCACCACCCTGCCCTACCTTGTCAGTGACTGTGGAGCCCAAGGGGAGCCTGGAAACCCCCACAGGCACGGTGGTGGCCGTCACCACAGCTGCCAAGCTAGAGCCCCACACTCAGCCCCTCCAGGGCTCCGTGCAGCTGGCTGTCCCCATCTACTCCCCCGCGCTCGTCAGCAATACTCCCCTCTTGGGCAATTCTGCTGCCCTCTTGAACAACCCAGCCTTGCTTCGGCCCTTACGGCCAAAGCCCCCCCTCCTCTTGCCAAAGCCCTCGATGACAGAGGAGCTGCCGCCACTGGCCTCCATCGCCCAGATCATTTCTTCCGTGTCCTCGGCCCCTACTCTGCTGAAAACGAAGGTAGCTGACCCTGGACCATCGATCACCAGCAGTAACACTGTGGCCACAGACAGCCCAGGAAGCTCCATCCCCAAAGCTGCCGCCACCCCCACTGACACCACAAGCTCTAAAGAATCCAGTGAGCCACCCCCTGCAGCCAGCAGCCCTGAGGAAGCCTTGCCTACTGAACAAGGGCCGGCTGCCACTTCCTCGTCGAGGAAGAGGGGCAGGAAAAGGGGACTGAGAAACCGGCCCCTCCCCAACAGCAGTGCTGTGGACCTGGACTCCAGTGGGGAGTTTGCTAGCATCGAGAAGATGCTGGCCACCACAGATACCAACAAGTTCAGTCCCTTTCTGCAGACTGCAGAGGATGACACTCAGGAAGAGGTGGCTGGAGCCCCTGCCGACCAGCATGGGCCCGCTGATGAGGAGCAAGGTAGCCCCGCAGAAGACAGGCTGCTGAGAGCAAAGCGGAACTCCTATGCCAACTGCCTGCAAAAGATCAACTGTCCCCACTGTCCCCGGGTCTTCCCTTGGGCCAGCTCCCTGCAGCGGCACATGCTTACACACACTGGTAAGAAGGCCCTCACGGCTCACCAGGCGGTGAGTCTTGAAAGGAAAGAGTAATGGGTAGGGATAGGAGTAGGCCTAAAGTTTGGGGCCTTTGTCTCATGCTCCATTCTTTGTCTCAGAAGTCACAGGCTGTTACTTTCCATATAATCTGTGCCTGTGGTCTGAGCCACCAAGGCTTATCTGTAAATAAATGTATCAGACACAGTGACAGTGGTCATAGGCTCCTTCACTTCCCTCCCCATAACCTTTGCCTGACAAGTTCCAAGAGTTTCTAAGTATGGAGGCCATTCCGGAGAAGTGGGACTTTGCATTAAGGTAACAGTGATGTAATGAGCTTGGTGCTTTGACATGATAATCTTCAGTGCCGTCTTTTTTTTTTTTTTTTGAACATTCTATGGAGTTCTTTAGCTACCACACATGTAATACAGAAAAGTGGGATTGGATATTTTTTCCCCTTCACTGAGGTAGCTCCAGCGTCCCTTACTTATTTTGACTTTTTTTCCTATTTGGAATACTTAGATGATTGATAGTAGTAATTTTTCTAAAGTTCTATTTATCCTAAAATTGTCAACTGTTGAGGAAAACATTCTGCGTATCATTTGAATGTTTTAATTAACAAAGCTAGATTACCAAAACAACATCCCGGAAATAGTTTTCAGATGTCAGTTTCTAGAAGTTGAAGTGTAGAACAGAGACTTATCTATTAAATTACTTTATGCCTAGTGCTTCTAATATTTCAATAGCCATCTAGAAAGGTATAATTATAATTTTCTGAATAGTATCACAGGATTTGTATCATCGATCGATTGGGCGATTGTTGTACATTCAGTGAAGTCCTTACCCTTTTGGAGTTTACAGTTTAAAATATGGATCACTGGCAAGATTTGACTTTTCAGACCAACAAGTATTTTGTAGTATTTGGGACAGACGGAAACATTACTTATTGATCAGAATGATGCTCAAATTTTACTGCAGATCTTTTTGCAGTAGATCTTGCTAGAAACACTCCAGGAAGGAATGCTGTGATTTCCACCCACCCACCCCCGCCCACTGAAGATTTGTGTAGATAGGCCATCTCTCAGCAAACTGACAGGCTTCCTGGGAGCCAAAGTGTCCATTTCTTTTCCATTTGTGATGGCATCTGCAGATACCAGAGACGTGTCCCCTCTTTCCCTGGGGTTTGATCACTGTTGGTGTAGGAGCATCTGAACCTGTTCGGTCCCCAGGGCCCACAGAGTAGAAAAAAGAGCCAACTCCTACAAGTTGTTCTCTTGCTTCTACACGCAAGCCATGGCACAAGTGTGCTTACGTGTGCACGCACACACAAACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGCAGCCAACAGCATTGAGCAAAACCCAATTTCAACTGTAGTTAAGCAAACTGCCTCCATCATGAGAGAGGGTCTCTTTCCATCCTCTCAGCTACTTTGTTGAATTATCCCAGCATCTGTACTTGGTCTCAACCCATTTCTCCATTCTACCCACTCCCTACCACGGAACAAAGAGGTCAGCTGCTGAATGTCCAACTAGGGGTCCACCTGCTGGCTGCCAGCACAAACATGGCTTTAGCTCTTTACCCTGCTTAGTTAGGTTCCAAGAATGTACTCTGAGGAGGAAGCTGTCATCTTTCATGTCCTCTTGGGCAGTTTCTACACACTCGATTTCCTCCCTCCTCCAGCTCTCCAACCTGTGGCTCACTGCGCTCCCTCTGGACATGTTGTACCTCGTGAGACAACAATGCACTGTCTCTGCCAGTTCCCCTCACAGCATCTCGGCCTGTGTCTTTAGGCCACAGGAGGACAAAGTGCCAGCAAACACAACCAGTCCCTTTCAGCAGTATCTGTCCTCACCTTTTCCTCCTTCCCTTTGCTCTGGTTCCTTGTTCACAGTGCTGGGTCAGGATGGTGCAATCTCTGAGAACCCCTCCAGCTGTGGCATCTGGGATCCCCTAGCTCCCTCTCATTCTCATGGGTGCTTGGAGCTCCTTTGCCAGCTCCTGGGCTCTTCCATCTCACCTTCTGCCCCACTGCTAATGGGTAACAAGCACTGACGTTTAAATTTGGGAGATGTCCTCACAGTATAGAAAGCAACTTGAGCTACTTGTACCTAGCTGCCTTTTACTAAGGTTTAATCCATGTTTTTGTATGTGGGTTTGTGTCTGCACATACGTGTGCAGGTAACTGCCCAGGCTAGAAGAAAGAGTTGGATCCCCTGGAGCCAAGGTTACAGGTGCTTGTGAGCTACCAGATGTAGGTGCTGAGAACCAAAGGGTCTTCAAGAGCAGCACTTTCTTTACCACTGAGCCATCTCTCCAGCCCAAGTACTTTATTAAGTGGTAGCTTTGACTGCAAAAGAAGAAAAGTACCAAGAAACCCTGGGCCCCGAGGGTAAAGTATGTGGGAAGTCCAAAGATGCTTAGCTCCTACAGTCTTGTCAGCACAAAAACTCCATGTGTGTCCCAGGCTAGTTCTAACCTTGATTCTCTTCAGAGAACATTTGCAGCTCGTCCATTTAGGACTTGACAAACAAGGTCCCGTTGTCCTCAGCAAACTCTTGTTCCTTCTGCCTGGCTTTGTTCCCAGTGCCCTTCAGATAATGCCTCTCTTCCTTTTCTGACTGCTCTGCATGAATGAATTTGGATGACTGGTGGCTTTAATGTTCACATTGGGGTGGGAGACATACAGGCCCCGGATACAAAAGTATGGTCACAGCTGCTCTTACACACACATATACACTCGCGCACGCGCGCACACACACAGTCTACCAGATTGGTAAAGTGCACTAGTGACTTTCAGACATACACTAAACAGGCTCACCATTTTTACATCCCTGCAAGGCAAAAAGCATATTACTATTTTAAAAGTAATTTTCTGCTTTGTATAAGCTTTAAATGATTGTGTTACTTGTCAGTTTGAGGTCCTTCAGTGGCACTAATGTGACTGTTCATGGAATACAGCAAAAGCATGTGAAAATTAAAAAGTAAATTATTTCATACCAAAAAAAAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039087:ENSMUST00000110238:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.376
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF139121=zf-C2H2_6=WD(100=2.8),PF134651=zf-H2C2_2=WD(100=2.6),PF134651=zf-H2C2_2=WD(100=2.7),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=PU(38.5=1.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTTCCCAGAGATGCCATG
R:
AGGCTTGACGTCTTTGGTGTG
Band lengths:
354-1599
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types