GgaINT0096710 @ galGal3
Intron Retention
Gene
ENSGALG00000012799 | RREB1
Description
NA
Coordinates
chr2:65854151-65858029:-
Coord C1 exon
chr2:65857840-65858029
Coord A exon
chr2:65856891-65857839
Coord C2 exon
chr2:65854151-65856890
Length
949 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGC
5' ss Score
10.12
3' ss Seq
TGTTTTTGCATGTCTTGCAGGTC
3' ss Score
10.93
Exon sequences
Seq C1 exon
GTGTGACATCTGTTGTATTACCTTTCGTACTCATCGGGGCTTACTGCGTCATAATGCAGTTATCCATAAGCAGCTTCCCAGAGATCCCACTGGAAAGCCTTTCATTCAGAACAACCCTTCAATTCCAGCAGGCTTCCACGACTTGGGATTCACAGACTTCTCCTGTAGGAAGTTCCCCCGCATTTCTCAG
Seq A exon
GTACGCTTTGTTCTTAGGAGCTTAAGGTACCCTCTAATATAGCGTATATCTTCTGAATGTATTGAAGGATTTGACCTACCAGAGACAAGGCATAGAATATTTTGTGGAGCCCACATTACTACTGTCTGCTCGGATACAGACACTTCCTTTTACTTTTTATCATATTCCTTCTCCCTTTCCCTATCCCGTTCTATTTTTTTTTCCCTTTTCCAAAGAACATTTGGCCTATCTTTTTTAAGTATTCCAGTGGTGTGAAGATATATAAAGTTACTTTAAACAAACACGTTGGCAGTGTTAGATCCATGCCCCTCCCTCCCAGCCTTCCTCAAACAATTTCACATCTAATGCTACCTAGGTAGCATTTAAATATTTAAATACAGCATTTGGATTCACAATTGTTTTCAGGTATAAAATCTATTTGTGAGCTTAATATTTTTCTTGGAAGAATAAATGTAATCAGACTCCCTAATCAGAAGTCTGACTGGTTTTGCCTCCGCATTTCATTAATTTGGTTTTGAGGGATGTTATGTTTGGTTGGTTTTTTCTGTTGTTTACCCTTCTTGGATGCTTTCTTTTTTTTTTTTTTTTTCCTTATAGTTTCTTTGTAGTAAAAGAGCTGAAGGAGATAGTCTTACTGTGCGTCTTACTGAAGTTAGCTGGGTAGTCCTCTGAGGCTCATGTCCTGTCAGTGAACAGAGAAAGGTTTCTGGAATGGTGGATTAGGGTGGAAAAGTATTTTAGAGCCTGAATAACCCTCTGAAGAAATTTGCCTCTATAGAAGGGAACTTCTGGAGAGTCAGCCCCAAATCTAGATATACCACTTAGGTGGCCAAAGGGCTTCTCTAAACTCCAGAAGAAGAGAGAGTGAAGGCAGTTTCGTTTTGCAGTAATATGTAATTGCTTTGTCAGTTGGAGGTGTCTACTCTAAATGTTTTTGCATGTCTTGCAG
Seq C2 exon
GTCTGGTGTGAAACAAATTTGCGAAGGTGCATCAGTGAATTCCATCGGTTTATTTGCGAGACGTGTAACAAGGCATTCCCCATGCTTTTGGCACTCAAACTGCACACAGAAACTCACGTGATGGATCAGGGAAGAGACAAGCACAAGCTACAGTCCACATCCCTACCCAGTGAGAACCCAGACCAGAAAGCCTTCATGGCATCCTTGGGCCTACAGTACACCAAAGACATCAAACCTGTCAAGCAGGAGGACGATACACAAGATGAGGTCCAAGAAATGCGGCTCAGAGCACTGAAGAGTAACCTACCTCAGGAACCCGGCAGCACTGGCCTGCTTAGCCTCTCTCCTCTGGAAGCTGCCACTATGGGGGGGCCATTTTCAGTCCTCCCACCTACAAAGGAGAACATAAAGCTCCTCTCGCTGCAGCCTTTCCAGAAGGGTTTTATCATCCAGCCTGACAGCAGTATTGTGGTAAAACCCATCTCCAATGAATCTGCAATTGAGTTGGCAGACATTCAGCAGATCTTGAAGATGGCTTCTTCCGCTCCTCCTCAAATCAGTCTTCCTCCACTTTCTAAGGCACCTTCTGTCCCTGTGCAGTCCATTTTCAAGCATATGCCACCACTGAAGCCAAAGCCTTTGGTAACGCCCCGAACAGTTGTCGCAACTTCTACACCTCCTCCTCTTATCAGTGCCCAGCAAGCCTCCCCCGGCTGCATTAGCCCAAGCCTCCCACCACCTCCTCTGAGGCTGATCAAGAACTCGGTGGAGACCTCCTCCAACTCTCACCTCTCCCAGCCAGGAGCCAAATCAAGTCCTTCCTCACAGTTGCTCCTCCAGCCCAAAGTAGAGCCTTTAACTCAGCACGAGATGAAGACACAACTGGAGCAGGACAGCATTATTGAAGCTCTCCTGCCTCTGAACATGGAAGCCAAGATCAAGCAAGAGGTGACAGAAGGGGACCTCAAAGCCATCATTGCAGGGGCAGCAAACAAGAAAGCCCCAACAATGAGGAAAGTCTTGTACCCCTGTCGTTTCTGTGACCAGGTGTTTGCTTTCTCTGGTGTCCTGAGAGCTCATATCCGTTCTCACTTGGGTATTTCCCCATACCAGTGCAACATCTGTGACTACATTGCAGCTGACAAGGCGGCGCTGATCCGGCACCTGCGGACACACAGTGGGGAGAGGCCTTATATTTGTAAAATCTGCCACTACCCTTTCACAGTTAAAGCCAACTGCGAGAGGCATCTGCGAAAGAAGCACCTCAAAGTGACCAGAAAGGATATAGAGAAGAACATTGAGTATGTCACCAGCAATGCCGCAGAGATGGTGGATGCCTTCTGTTCTCCAGACACTGTGTGCAAGTTGTGCGGCGAGGATCTGAAGCATTACCGGGCCCTCCGCATCCACATGAGGACTCACAGTGGCTGCCAGAAGAAGAAGCCATTTGAGTGCAAGGAGTGTGGCACAGCCTTTTCAGCCAAGAGGAACTGCATTCACCATATCCTGAAGCAGCATTTGCATGTGCAGGAAAGGGAGATTGAAAATTACATCCTGGTGGTGGACTGCAGTGCTCAGGAGAGCCACACAGATGCTCCTTTATTGGAGGACAGCACTTACATGGACTGCAAGCCCATCACTCCTTTCCTAGAGCCACAAAACGGCTTCTTGCTTGGGACGTCATCTCATGTTCCCATCAAACTTGAACCTATGGGCAACTTCCCGATGGATTTTGATGAGCCGTTGGATTTCTCTCAGAAGAGCAAAAACCTGAGTGCTGTGCAAGTGAAGCAGGAGAACCTGCTTGTCTCTTCTCCCTTGTCCTTCTACGACTGTTCCATGGAGCCCATTGACCTGTCCATCCCCAAAGTCCTGAAGAGAGATAATGATATCCCAGGTGAGGCCAGGAATCAAGAGCTGGCTTCTTCTGTGATCACTGATAATGCCTATAACTGTCAGCAGTGTCCTCTGGGCTTTGGTGCCAATGGGAACTCAGAGAAAAACAGGGCTGTCGGACATCCCCAGCCACTGAAGGGTTCGTTGCATTTGACTGTCCCAATCATTTCCCCAGCTCTCCTTGGCAATTCTGCCTTGCTGAGACCCTTGAGGCCTAAACCACCACCGCAACCTCTCTTGCCAAAGCCTCCAGTAACTAAAGAGCTGCCACCGCTGGCTTCCATTGCACAGATCATTTCATCTGTGTCGTCTGCTCCTGCTTTGCTGAAAACGGAGGCTGCAGATGCCAGTCCCAAGGCAGCGAGCAGCTCCACTGGGTGTGACAAATCAGGGAATGCCAAAGCAAAAATGACAATCGTGACCGCCATTCAGAGAGACTCCAGCCTTCCCAGTGACCTGACTCAGGCCTCTGATCCCGAGCCGTCTCCCATTGCTGACACTGGGTTGACTAAGAAGAGAGGTAGAAAGAAAGGAACAAAAAACAAGCCTAAACTGAGCAGTGGTGTGGATCTGGAGTCAAGCGGGGAGTTTGCCAGCATAGAGAAGATGCTGGCTACCACAGACACTAATAAATTTAGCCCGTTTCTACAGTCCACTGACAATTTCAAGGAAGAAAGCGGCCAAAATGGAACAAGTGAGGATGAAAAGGAAACTCCTGAAGATAAGCTGCTGAGAGGGAAGAGGAACACTTACTCAGACTGCCCGCAAAAAATAACCTGTCCTTACTGTCCTCGAGTCTTTTCGTGGGCAAGTTCCCTACAGCGGCACATGCTCACTCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012799:ENSGALT00000037239:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.266 A=NA C2=0.375
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=2.7),PF134651=zf-H2C2_2=WD(100=2.8),PF134651=zf-H2C2_2=WD(100=3.2),PF0009621=zf-C2H2=WD(100=2.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTCCACGACTTGGGATTC
R:
TCTGAGCCGCATTTCTTGGAC
Band lengths:
348-1297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]