BtaINT0130197 @ bosTau6
Intron Retention
Gene
ENSBTAG00000023933 | SEC16A
Description
SEC16 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:29006]
Coordinates
chr11:103942214-103942665:-
Coord C1 exon
chr11:103942528-103942665
Coord A exon
chr11:103942291-103942527
Coord C2 exon
chr11:103942214-103942290
Length
237 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAC
5' ss Score
7.29
3' ss Seq
CCTCCTCCGTCTCCCCGCAGATG
3' ss Score
15.05
Exon sequences
Seq C1 exon
CTGGAACCAGGGCACGCTACGTGGACGTCTTGAACCCGGGGGGCCCCCAGCGGAGCGAGCCAGCCGTGGCTCCCACTGACCTCTTTGCACCCCTGGCCCCGCTTCCAATTCCGGCTCACCTGTTGGGCCCAAACGCAG
Seq A exon
GTACACAGCCCGGGCAGCAGGGCTGTCCGCTGCCAGCCTGCTGGCCTCAGGTCTCCTTCTGGGGCCCTGGCCTTGGTCCTCTTTCTAGAAGAGCACCATGGACGCAGAGCGCGAGGCCCGCCGTGGTGTCTGCAGGCGTGTGTGCGTGGGGGGGCAGGCGGTATGTGTCCCCTGGGGCTTAGTCCCCCAGGCACCAGGGCCGTGTGGACAGCAAGGGCCTCCTCCGTCTCCCCGCAG
Seq C2 exon
ATGCAGAGGAGCTGCCATCCACTGAGGGGGCCAGCAGGGAGGGGCCGGCCAGGCCAGAGCCCACCTCGGATCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023933:ENSBTAT00000042743:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.936 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAACCAGGGCACGCTA
R:
CTTGGGATCCGAGGTGGGC
Band lengths:
215-452
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development