DreINT0135073 @ danRer10
Intron Retention
Gene
ENSDARG00000063300 | si:ch1073-385i9.2
Description
si:ch1073-385i9.2 [Source:ZFIN;Acc:ZDB-GENE-131127-512]
Coordinates
chr16:52049686-52050097:-
Coord C1 exon
chr16:52049957-52050097
Coord A exon
chr16:52049772-52049956
Coord C2 exon
chr16:52049686-52049771
Length
185 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
GTGTAACACTGTTCTTTCAGCCC
3' ss Score
6.17
Exon sequences
Seq C1 exon
GCACGAGGAGTCGTTATGTGGATGTGCTGAATCCTGGTCGTGGAGGAGCTAAAGCAGTGGCTTCAGTGCCTCCTCCTGCTGATCTGTTCGCTCCTCTCGCACCCATGGCCATGCCAGCCAACCTCTTCACACCAGCTGCAG
Seq A exon
GTGTGTGTGTGTGTGTGTTTGTGTCTGTGAGTCTGGCACTGTGTGTGTCCTACTGTGCATGTCGCTGTCTGAATGCACATGGCTGTGTGTGTGTCACTGTGTGTGTATGCGCATCACTGTGTTTGTGTGTATGTATGCGAGTACATCAGTGTATGTTTGTGAGAAGTGTAACACTGTTCTTTCAG
Seq C2 exon
CCCCAGATGAGCAGCAGCCGATGGAGGGAAGTGTTCCAGACACCAGTGGAGAAAACACACTGCAGACAAGTGCCACAGTGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063300:ENSDART00000092348:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGGAGTCGTTATGTGGATGTG
R:
CACTGTGGCACTTGTCTGCAG
Band lengths:
218-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]