BtaINT0131650 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000098 | SETDB1
Description
SET domain, bifurcated 1 [Source:HGNC Symbol;Acc:HGNC:10761]
Coordinates
chr3:19855194-19855592:-
Coord C1 exon
chr3:19855436-19855592
Coord A exon
chr3:19855350-19855435
Coord C2 exon
chr3:19855194-19855349
Length
86 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
3' ss Seq
GATCTCTAATCTCCTAGAAGCTT
3' ss Score
1.19
Exon sequences
Seq C1 exon
GTGCTGTGAGAAGCAAAGGTCCTGTGGTCCAGTACACTCAGGATCTAACAAGTACTGGAACCCAGTTCAAGCCTATGGAACCCCCACAGCCGACAGCCCCACCTGCCCCACCTGCCCCACCTGGTCCAGCTCTGTCCCCCCAGGCAGGTGACAGTGA
Seq A exon
GTGAGTGCTATTCCTTCTTTTTCAGCAGTTTCTTTTATATTACATTTTCTGTATCCCTTACTGTATGATCTCTAATCTCCTAGAAG
Seq C2 exon
CTTGGAAGGCCAGCTTGCCCAATCTCGGAAGCAGGTAGCCAAAAAAAGCACATCTTTCCGGCCAGGATCTGTGGGCTCTGGTCATTCCTCCCCTACATCCCCTGCACTCAGTGAAAATGCCCCTGGTGGGAAACCTGGGATCAATCAGACATATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000098:ENSBTAT00000000107:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCTGTGGTCCAGTACACT
R:
GCTACCTGCTTCCGAGATTGG
Band lengths:
179-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]